RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 KRTAP4-16G5E9R7 235 aaPredicted RBP1.52□□□□□ -2.17
CD44-216ENST00000525293 C3orf84H3BNL1 204 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 H7BZZ5 65 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 GNRH2O43555 120 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 IGLV1-51P01701 117 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 IGLV2-23P01705 113 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 BGLAPP02818 100 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 CCL3P10147 92 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 GCHFRP30047 84 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 XCL1P47992 114 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 ATP5EP56381 51 aaPredicted RBP1.52□□□□□ -2.17
CD44-216ENST00000525293 SYCNQ0VAF6 134 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 ZNF678Q5SXM1 525 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 C6orf201Q7Z4U5 140 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 Q8IYB0 196 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 FAM19A2Q8N3H0 131 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 CCL4L1Q8NHW4 92 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 PPP1R1CQ8WVI7 109 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 CHCHD1Q96BP2 118 aaKnown RBP1.52□□□□□ -2.17
CD44-216ENST00000525293 C16orf74Q96GX8 76 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 NHP2Q9NX24 153 aaKnown RBP1.52□□□□□ -2.17
CD44-216ENST00000525293 NDUFA12Q9UI09 145 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 MYH8P13535 1937 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 DOCK2Q92608 1830 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 ITSN1Q15811 1721 aa1.52□□□□□ -2.17
CD44-216ENST00000525293 CLTCL1P53675 1640 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 ADCY10Q96PN6 1610 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 SAMD9Q5K651 1589 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 CEP170Q5SW79 1584 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 AGLP35573 1532 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 NEXMIFQ5QGS0 1516 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 SCN1AP35498 2009 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 LRRK1Q38SD2 2015 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 MYO18BQ8IUG5 2567 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 RAI1Q7Z5J4 1906 aaPredicted RBP1.51□□□□□ -2.17
CD44-216ENST00000525293 IGKV2D-26A0A0A0MRZ7 120 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 IGHV1-24A0A0C4DH33 117 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 IQCF6A8MYZ5 107 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 C10orf142B7Z368 130 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 H3BVH4 76 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 J3QLW9 94 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 IGLV1-47P01700 117 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 DEFA4P12838 97 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 COX7A1P24310 79 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 S100A3P33764 101 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 TSPEAR-AS2P59090 65 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 SUPT4H1P63272 117 aaKnown RBP1.51□□□□□ -2.17
CD44-216ENST00000525293 Q1T7F1 81 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 ESRGQ1W209 222 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 DEFB121Q5J5C9 76 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 TMEM170BQ5T4T1 132 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 GDF5OSQ5U4N7 250 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 CYP2G1PQ6ZSU1 146 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 MIR17HGQ75NE6 70 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 LINC00643Q86TS7 51 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 C14orf178Q8N769 122 aaPredicted RBP1.51□□□□□ -2.17
CD44-216ENST00000525293 IMMP1LQ96LU5 166 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 PHLDA3Q9Y5J5 127 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 ANKRD31Q8N7Z5 1873 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 SHANK3Q9BYB0 1731 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 PEAK1Q9H792 1746 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 KDM6BO15054 1643 aa1.51□□□□□ -2.17
CD44-216ENST00000525293 MEGF6O75095 1541 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 MCM3APO60318 1980 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SCN9AQ15858 1988 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TICRRQ7Z2Z1 1910 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TSPOAP1O95153 1857 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 UBR2Q8IWV8 1755 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 EPG5Q9HCE0 2579 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 IGLV8-61A0A075B6I0 122 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 IGHV3OR15-7A0A075B7D8 119 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 IGHV7-81A0A0B4J1V7 117 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 IGHV3-74A0A0B4J1X5 117 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 IGHV3-72A0A0B4J1Y9 119 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TRAV13-2A0A0B4J235 113 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TRAV3A0A0B4J244 114 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TCRBV4S1A1TA0A5B7 111 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 E7EUB6 86 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 C5orf67F2Z3F1 127 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SLC25A20O43772 301 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 ZNF861PO60384 105 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 TRGV3P03979 118 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 CXCL8P10145 99 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SPINT3P49223 89 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 ZNF117Q03924 483 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 MRPL51Q4U2R6 128 aaKnown RBP1.5□□□□□ -2.17
CD44-216ENST00000525293 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.5□□□□□ -2.17
CD44-216ENST00000525293 C12orf73Q69YU5 71 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 LYPD2Q6UXB3 125 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 ORMDL3Q8N138 153 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 ZFAND2AQ8N6M9 145 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 C20orf203Q8NBC4 194 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SPTSSBQ8NFR3 76 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 PFN4Q8NHR9 129 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SMCR5Q8TEV8 140 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 SMIM4Q8WVI0 70 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 RETNLBQ9BQ08 111 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 GABARAPL1Q9H0R8 117 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 LINC00574Q9H8X3 128 aa1.5□□□□□ -2.17
CD44-216ENST00000525293 C8orf17Q9NRJ1 99 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms