RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 TPPP3Q9BW30 176 aa11.6□□□□□ -0.55
LSM1-204ENST00000522515 EDA2RQ9HAV5 297 aa11.6□□□□□ -0.55
LSM1-204ENST00000522515 MRPL16Q9NX20 251 aaKnown RBP11.6□□□□□ -0.55
LSM1-204ENST00000522515 MUC4Q99102 2169 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 TRGV1A0A0A0MS02 117 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 MUC21A0A0G2JKD1 596 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 MUC21A0A140T8X8 626 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 M0R2P5 195 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 SNAI2O43623 268 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 OR5AL1P0C617 328 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 SPART-AS1P0CW21 52 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 ANAPC16Q96DE5 110 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 STAB2Q8WWQ8 2551 aa11.59□□□□□ -0.55
LSM1-204ENST00000522515 CXorf65A6NEN9 183 aa11.58□□□□□ -0.55
LSM1-204ENST00000522515 PPP1R2P9O14990 202 aa11.58□□□□□ -0.55
LSM1-204ENST00000522515 SVBPQ8N300 66 aa11.58□□□□□ -0.55
LSM1-204ENST00000522515 OR10AG1Q8NH19 301 aa11.58□□□□□ -0.55
LSM1-204ENST00000522515 PHLDA3Q9Y5J5 127 aa11.58□□□□□ -0.55
LSM1-204ENST00000522515 A0A1W2PPQ1 181 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GAGE12BA1L429 117 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 C7orf77A4D0Y5 90 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GAGE7O76087 117 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GAGE12FP0CL80 117 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GAGE12GP0CL81 117 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GAGE12IP0CL82 117 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 DEFB130BP0DP73 79 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 DEFB130AP0DP74 79 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 LGALS9BQ3B8N2 356 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 ZNF876PQ49A33 203 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 LYZL1Q6UWQ5 148 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 LINC00612Q8N6U2 182 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 RASL10AQ92737 203 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 GFRA4Q9GZZ7 299 aa11.58□□□□□ -0.56
LSM1-204ENST00000522515 FAM231BA6NCW3 169 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 HIGD1CA8MV81 97 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 SNAPINO95295 136 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 FOXA3P55318 350 aaPredicted RBP11.57□□□□□ -0.56
LSM1-204ENST00000522515 SSTP61278 116 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 DMRTA1Q5VZB9 504 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 C11orf45Q8TAV5 145 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 TGP01266 2768 aa11.57□□□□□ -0.56
LSM1-204ENST00000522515 TEX48A0A1B0GUV7 120 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 SMIM27A0A1W2PRY6 76 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 F2Z2F3 143 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 M0R381 172 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 CTRLP40313 264 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 NANOS2P60321 138 aaKnown RBP11.56□□□□□ -0.56
LSM1-204ENST00000522515 RHEBQ15382 184 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 C12orf74Q32Q52 190 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 PTH2Q96A98 100 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 PGLYRP4Q96LB8 373 aa11.56□□□□□ -0.56
LSM1-204ENST00000522515 DAD1P61803 113 aa11.55□□□□□ -0.56
LSM1-204ENST00000522515 SPANXN1Q5VSR9 72 aa11.55□□□□□ -0.56
LSM1-204ENST00000522515 CTDSP1Q9GZU7 261 aa11.55□□□□□ -0.56
LSM1-204ENST00000522515 RPS10P5Q9NQ39 176 aa11.55□□□□□ -0.56
LSM1-204ENST00000522515 ZFP82Q8N141 532 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 NUP35Q8NFH5 326 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 NAT8BQ9UHF3 227 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 TRGV2A0A075B6R0 118 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 A0A087WWC5 75 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 NXPH4O95158 308 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 ATRAIDQ6UW56 229 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 SYT8Q8NBV8 401 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 JPT2Q9H910 190 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 MSRB1Q9NZV6 116 aa11.54□□□□□ -0.56
LSM1-204ENST00000522515 NTF3P20783 257 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 FAM3BP58499 235 aaPredicted RBP11.53□□□□□ -0.56
LSM1-204ENST00000522515 CACNG7P62955 275 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 PIK3CD-AS1Q5SR53 167 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 Q6ZTC4 211 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 POM121L12Q8N7R1 296 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 CNFNQ9BYD5 112 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 TMEM242Q9NWH2 141 aa11.53□□□□□ -0.56
LSM1-204ENST00000522515 IGHV4-4A0A075B6R2 117 aa11.52□□□□□ -0.57
LSM1-204ENST00000522515 S100A1P23297 94 aa11.52□□□□□ -0.57
LSM1-204ENST00000522515 C18orf15Q96N68 181 aa11.52□□□□□ -0.57
LSM1-204ENST00000522515 NDUFAF3Q9BU61 184 aa11.52□□□□□ -0.57
LSM1-204ENST00000522515 IGHV3-53P01767 116 aa11.51□□□□□ -0.57
LSM1-204ENST00000522515 CFAP126Q5VTH2 177 aa11.51□□□□□ -0.57
LSM1-204ENST00000522515 WDR73Q6P4I2 378 aa11.51□□□□□ -0.57
LSM1-204ENST00000522515 A0A1B0GUT8 65 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 RS1O15537 224 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 TWIST1Q15672 202 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 ZNF479Q96JC4 524 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 SAMD10Q9BYL1 202 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 TRAV4A0A0B4J268 109 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 A8MWV9 139 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 OR4C5Q8NGB2 326 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 BORCS7Q96B45 105 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 IMMP2LQ96T52 175 aa11.5□□□□□ -0.57
LSM1-204ENST00000522515 ATP5G1P05496 136 aa11.49□□□□□ -0.57
LSM1-204ENST00000522515 HTN3P15516 51 aa11.49□□□□□ -0.57
LSM1-204ENST00000522515 NACAE9PAV3 2078 aa11.48□□□□□ -0.57
LSM1-204ENST00000522515 A0A087WWL8 130 aa11.48□□□□□ -0.57
LSM1-204ENST00000522515 CRYGDP07320 174 aa11.48□□□□□ -0.57
LSM1-204ENST00000522515 MRPL54Q6P161 138 aaKnown RBP11.48□□□□□ -0.57
LSM1-204ENST00000522515 C14orf178Q8N769 122 aaPredicted RBP11.48□□□□□ -0.57
LSM1-204ENST00000522515 URGCP-MRPS24S4R325 110 aa11.48□□□□□ -0.57
LSM1-204ENST00000522515 IGHV3-73A0A0B4J1V6 119 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 HOXA5P20719 270 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms