RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ZNF705GA8MUZ8 300 aaPredicted RBP4.79□□□□□ -1.64
SDCBP-208ENST00000520228 HMGB3O15347 200 aaKnown RBP4.79□□□□□ -1.64
SDCBP-208ENST00000520228 SPART-AS1P0CW21 52 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 CT45A10P0DMU9 189 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 LEPP41159 167 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 CSN1S1P47710 185 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 CDC34P49427 236 aaPredicted RBP4.79□□□□□ -1.64
SDCBP-208ENST00000520228 ERCC8Q13216 396 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 LYPD1Q8N2G4 141 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 TMEM256Q8N2U0 113 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 PHYHIPLQ96FC7 376 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 LINC00477Q96M19 166 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 ODF3Q96PU9 254 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 LINC01587Q99440 93 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 NDUFAF3Q9BU61 184 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 AGPAT4-IT1Q9H0P7 198 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 TP53TG3Q9ULZ0 132 aa4.79□□□□□ -1.64
SDCBP-208ENST00000520228 KMT2CQ8NEZ4 4911 aaKnown RBP4.79□□□□□ -1.64
SDCBP-208ENST00000520228 IGKV2-40A0A087WW87 121 aaPredicted RBP4.78□□□□□ -1.64
SDCBP-208ENST00000520228 LCE6AA0A183 80 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 HMSDA8MTL9 139 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 C11orf94C9JXX5 98 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 H7BYZ3 331 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 IGKV2D-40P01614 121 aaPredicted RBP4.78□□□□□ -1.64
SDCBP-208ENST00000520228 PRM2P04554 102 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 HTN1P15515 57 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 TAS2R60P59551 318 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 C12orf74Q32Q52 190 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 FAM74A1Q5RGS3 127 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 TMEM78Q5T7P6 136 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 ZNF767PQ75MW2 155 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 KCNRGQ8N5I3 272 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 CMTM2Q8TAZ6 248 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 RXFP4Q8TDU9 374 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 GTSF1Q8WW33 167 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 HYLS1Q96M11 299 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 C20orf144Q9BQM9 153 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 ACTR3CQ9C0K3 210 aaPredicted RBP4.78□□□□□ -1.64
SDCBP-208ENST00000520228 Q9H3A6 140 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 OTORQ9NRC9 128 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 CYTL1Q9NRR1 136 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 CELA1Q9UNI1 258 aa4.78□□□□□ -1.64
SDCBP-208ENST00000520228 DNAH7Q8WXX0 4024 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 TRAV10A0A0B4J240 114 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 A0A0D9SG52 128 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 PGPA6NDG6 321 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 CXorf1O96002 111 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 SLC25A5P05141 298 aaKnown RBP4.77□□□□□ -1.65
SDCBP-208ENST00000520228 STAG3L2P0CL84 134 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 STAG3L3P0CL85 134 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 ARL14EPLP0DKL9 152 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 AZU1P20160 251 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 RNASE4P34096 147 aaKnown RBP4.77□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF138P52744 262 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF345Q14585 488 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 AKR1C8PQ5T2L2 129 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 FAM222AQ5U5X8 452 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 NIPSNAP3BQ9BS92 247 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 SPXQ9BT56 116 aa4.77□□□□□ -1.65
SDCBP-208ENST00000520228 YTHDF2Q9Y5A9 579 aaKnown RBP4.77□□□□□ -1.65
SDCBP-208ENST00000520228 DEFB131BA0A096LNP1 70 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 TRAV12-3A0A0B4J271 114 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 KANTRA0A1W2PQU2 76 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 C7orf71A4D174 169 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 RBAKDNA6NC62 111 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 IGLL5B9A064 214 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 PFDN1O60925 122 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 GPX1P07203 203 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 NMBP08949 121 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 CRISP2P16562 243 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 GCHFRP30047 84 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF493Q6ZR52 646 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 IQCF2Q8IXL9 164 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 FAM19A4Q96LR4 140 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 C9orf85Q96MD7 179 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 TMEM167BQ9NRX6 74 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF492Q9P255 531 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 RPH3ALQ9UNE2 315 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 CSMD3Q7Z407 3707 aa4.76□□□□□ -1.65
SDCBP-208ENST00000520228 TRBV7-9A0A0J9YWB2 115 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 CTXND1A0A1B0GTU2 59 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 LYRM9A8MSI8 78 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 KLLNB2CW77 178 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 KRTAP1-4P0C5Y4 121 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 DEFB130BP0DP73 79 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 DEFB130AP0DP74 79 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 DAD1P61803 113 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 EIF5AP63241 154 aaKnown RBP4.75□□□□□ -1.65
SDCBP-208ENST00000520228 BTN1A1Q13410 526 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF726P1Q15940 193 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 GOLT1AQ6ZVE7 132 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 SSX7Q7RTT5 188 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 TCTE3Q8IZS6 198 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 ZFAND2AQ8N6M9 145 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 ARL6IP6Q8N6S5 226 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 Q8TAT8 98 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 SUN5Q8TC36 379 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 TMEM263Q8WUH6 116 aaKnown RBP4.75□□□□□ -1.65
SDCBP-208ENST00000520228 C16orf74Q96GX8 76 aa4.75□□□□□ -1.65
SDCBP-208ENST00000520228 ZNF471Q9BX82 626 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms