RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 C2orf91Q6ZV80 131 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 U3KQK5 164 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 TRAV12-1A0A0B4J245 112 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 KLHL30-AS1Q8NEE0 82 aa6.48□□□□□ -1.37
LIMCH1-216ENST00000512820 LY6LH3BQJ8 138 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 MSMBP08118 114 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 ZNF415Q09FC8 603 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 STHQ8IWL8 128 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 PHLDA1Q8WV24 401 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 TRGV2A0A075B6R0 118 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 ODF3BA8MYP8 253 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 FGF6P10767 208 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 DEFB131AP59861 70 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 DEFB1P60022 68 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 A0A1W2PRX2 142 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 TMEM95Q3KNT9 176 aa6.47□□□□□ -1.37
LIMCH1-216ENST00000512820 ATP6V0BQ99437 205 aa6.46□□□□□ -1.37
LIMCH1-216ENST00000512820 A0A0C4DFX4 3053 aa6.46□□□□□ -1.37
LIMCH1-216ENST00000512820 TCF15Q12870 199 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 MORN3Q6PF18 240 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 TOMM6Q96B49 74 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 TANC2Q9HCD6 1990 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 BRCA2P51587 3418 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 IGKV2D-26A0A0A0MRZ7 120 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 TRBV7-9A0A0J9YWB2 115 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 C5orf56Q8N8D9 126 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 BAALCQ8WXS3 180 aa6.46□□□□□ -1.38
LIMCH1-216ENST00000512820 H3BUA1 57 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 ADORA2A-AS1P86434 159 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 SUMO4Q6EEV6 95 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 RNF185Q96GF1 192 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 SMAD5-AS1Q9Y6J3 95 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 DSCR9P59020 149 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 ZFP2Q6ZN57 461 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 CCDC140Q96MF4 163 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 SIRPDQ9H106 197 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 TRAV8-3A0A0A6YYJ7 113 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 E9PLD3 99 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 SLC25A20O43772 301 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 TRGV1A0A0A0MS02 117 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 FSTL3O95633 263 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 C11orf44Q8N8P7 122 aa6.45□□□□□ -1.38
LIMCH1-216ENST00000512820 SPG11Q96JI7 2443 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 LINC01548A6NM66 108 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 ADARB2-AS1A8MUL3 147 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 RNASE1P07998 156 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 Q71RC1 249 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 NDUFA12Q9UI09 145 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 TNFRSF13BO14836 293 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 LGALS1P09382 135 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 NBL1P41271 181 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 RPL39P62891 51 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 FBXL19-AS1Q494R0 122 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 TRAV13-1A0A0B4J241 112 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV3-53P01767 116 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 BLCAPP62952 87 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 RPL36AP83881 106 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 GATD1Q8NB37 220 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 RASL10AQ92737 203 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 RPL36ALQ969Q0 106 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 AJUBAQ96IF1 538 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 SCGB1A1P11684 91 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 UNQ9165/PRO28630Q6UXU0 137 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 ZNF625Q96I27 306 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 C1QTNF4Q9BXJ3 329 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 PIEZO2Q9H5I5 2752 aa6.44□□□□□ -1.38
LIMCH1-216ENST00000512820 CFC1BP0CG36 223 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 CFC1P0CG37 223 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 RHOHQ15669 191 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV3-16A0A0C4DH30 117 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 RNASE13Q5GAN3 156 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 UBE2E2Q96LR5 201 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 TM2D2Q9BX73 214 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 C11orf86A6NJI1 115 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 INSP01308 110 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 DSCAMO60469 2012 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 H3BMM0 161 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 TRBV12-3P01733 135 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV4-38-2P0DP08 117 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 TCTEX1D4Q5JR98 221 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 LINC01356Q8N9X3 169 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 UBE2WQ96B02 151 aa6.43□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV3-38A0A0C4DH36 116 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 PRIMA1Q86XR5 153 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 MAPKAPK5-AS1Q8N8E1 139 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV4-61A0A0C4DH41 118 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 RHODO00212 210 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 GAS8-AS1O95177 125 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 ZFAND3Q9H8U3 227 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 TRGV4A0A0C4DH28 118 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 LEPROTO15243 131 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 MED14OSP0DP75 135 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 LINC00158P58513 81 aa6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 NTN5Q8WTR8 489 aaPredicted RBP6.42□□□□□ -1.38
LIMCH1-216ENST00000512820 A0A0J9YXV3 536 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 A4D1N5 150 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 IGF1P05019 195 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 GATA3P23771 443 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 EBI3Q14213 229 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 MAPK1IP1LQ8NDC0 245 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms