RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RPL35AP18077 110 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 CNFNQ9BYD5 112 aa9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 TRAV13-1A0A0B4J241 112 aa9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 IGHV1OR15-9A0A0B4J2B8 117 aa9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 C17orf100A8MU93 164 aa9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 SUMO2P61956 95 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-213ENST00000511496 IGHV3OR16-8A0A075B7F1 116 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 A0A0B4J2C4 111 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 ZNF833PQ6ZTB9 187 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 C2orf48Q96LS8 159 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 IGLV2-23P01705 113 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 CRYGDP07320 174 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 LINC00643Q86TS7 51 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 ZNF491Q8N8L2 437 aa9.2□□□□□ -0.94
LIMCH1-213ENST00000511496 EDN2P20800 178 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 DLX6P56179 175 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 Q0VFX4 171 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 PYGO1Q9Y3Y4 419 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 ICOSQ9Y6W8 199 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 TRBV30A0A0K0K1B3 111 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 ADARB2-AS1A8MUL3 147 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 IGHV1-2P23083 117 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 IGKV3D-20A0A0C4DH25 116 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 F8WDY8 70 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 MGPP08493 103 aa9.19□□□□□ -0.94
LIMCH1-213ENST00000511496 ZFHX4Q86UP3 3567 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 IGLV4-69A0A075B6H9 119 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 TINCRA0A1B0GVN0 87 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 M0R381 172 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 FOLR3P41439 243 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 C11orf21Q9P2W6 132 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 C10orf142B7Z368 130 aa9.18□□□□□ -0.94
LIMCH1-213ENST00000511496 TMEM258P61165 79 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 PRB3Q04118 309 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 DEFB127Q9H1M4 99 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 TMEM223A0PJW6 202 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 ATP5G1P05496 136 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 CCL4P13236 92 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 WT1P19544 449 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 DYNAPQ8N1N2 210 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 PRAC2D3DTV9 90 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 LINC00336Q6ZUF6 198 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 TP53TG1Q9Y2A0 90 aa9.17□□□□□ -0.94
LIMCH1-213ENST00000511496 TRGV5A0A0B4J1U4 118 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 IGHV3-35A0A0C4DH35 117 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 ATOX1O00244 68 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 IGHG3P01860 377 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 CCL5P13501 91 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 GATA4P43694 442 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 RPL39P62891 51 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 CNEP1R1Q8N9A8 125 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 PAPPA-AS1Q5QFB9 102 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 SPANXCQ9NY87 97 aa9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 SPENQ96T58 3664 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-213ENST00000511496 ACYP1P07311 99 aa9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 MNX1P50219 401 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 AMELXQ99217 191 aa9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 PDE6HQ13956 83 aa9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 C8orf31Q8N9H6 132 aa9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 TTTY12Q9BZ98 90 aa9.15□□□□□ -0.94
LIMCH1-213ENST00000511496 I3L2K1 104 aa9.15□□□□□ -0.95
LIMCH1-213ENST00000511496 IGLV3-19P01714 112 aa9.15□□□□□ -0.95
LIMCH1-213ENST00000511496 MRGPRG-AS1Q2M3A8 158 aa9.15□□□□□ -0.95
LIMCH1-213ENST00000511496 SDIM1Q6ZPB5 146 aa9.15□□□□□ -0.95
LIMCH1-213ENST00000511496 PEMTQ9UBM1 199 aa9.15□□□□□ -0.95
LIMCH1-213ENST00000511496 TSHBP01222 138 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 SEC61GP60059 68 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 RNF182Q8N6D2 247 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 PRO0628Q9UI54 55 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 POLEQ07864 2286 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 PFN2P35080 140 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 DEFB121Q5J5C9 76 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 LINC01600Q96MT4 127 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 SIT1Q9Y3P8 196 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 IGHV3-23P01764 117 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 MALP21145 153 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 IGFBP4P22692 258 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 MSMPQ1L6U9 139 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 GAFA1Q96PS6 74 aa9.14□□□□□ -0.95
LIMCH1-213ENST00000511496 TRBV7-1A0A0A6YYK4 115 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 I3L3M4 83 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 LST1O00453 97 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 DPH3P1Q9H4G8 78 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 ZNF580Q9UK33 172 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 TMEM190Q8WZ59 177 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 SPANXDQ9BXN6 97 aa9.13□□□□□ -0.95
LIMCH1-213ENST00000511496 IGKV3D-7A0A0C4DH55 119 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 COX8CQ7Z4L0 72 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 CACNA1BQ00975 2339 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 IGHV7-4-1A0A0J9YVY3 117 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 C5orf67F2Z3F1 127 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 Q6ZT83 130 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 MBD3L2Q8NHZ7 208 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 OPRPNQ99935 248 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 SLC50A1Q9BRV3 221 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 PVRIGQ6DKI7 326 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 C5orf38Q86SI9 138 aa9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 PRRC2AP48634 2157 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-213ENST00000511496 NTN3O00634 580 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms