RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 RNF223E7ERA6 249 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 IGKV3-20P01619 116 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 COX6B1P14854 86 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 SMIM2Q9BVW6 85 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 TTTY13Q9BZ97 58 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 ZANQ9Y493 2812 aa8.42□□□□□ -1.06
CHMP3-209ENST00000494623 DPM2O94777 84 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 ZNF688P0C7X2 276 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 SUMO2P61956 95 aaKnown RBP8.41□□□□□ -1.06
CHMP3-209ENST00000494623 RNF151Q2KHN1 245 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 AMMECR1LQ6DCA0 310 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 APRG1Q8IVJ8 170 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 OR4C5Q8NGB2 326 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 OR9G4Q8NGQ1 327 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 MRPL35Q9NZE8 188 aaKnown RBP8.41□□□□□ -1.06
CHMP3-209ENST00000494623 ANKRD17O75179 2603 aaKnown RBP8.41□□□□□ -1.06
CHMP3-209ENST00000494623 TRAV12-3A0A0B4J271 114 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 PSMG4Q5JS54 123 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 ZC2HC1BQ5TFG8 222 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 FAM159AQ6UWV7 190 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 DUX5Q96PT3 197 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 ZNF462Q96JM2 2506 aa8.41□□□□□ -1.06
CHMP3-209ENST00000494623 A0A096LNT2 108 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 ZNF580Q9UK33 172 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 FBN2P35556 2912 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 TRBV7-9A0A0J9YWB2 115 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 SIVA1O15304 175 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 SYNJ2BPP57105 145 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 SEC11AP67812 179 aa8.4□□□□□ -1.06
CHMP3-209ENST00000494623 KLLNB2CW77 178 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.39□□□□□ -1.07
CHMP3-209ENST00000494623 MED14OSP0DP75 135 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 HSD52Q0P140 79 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 ADAMTSL5Q6ZMM2 481 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 BBC3Q96PG8 261 aaPredicted RBP8.39□□□□□ -1.07
CHMP3-209ENST00000494623 JPT2Q9H910 190 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 TRAV8-6A0A0B4J262 113 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 J3QLI3 93 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 CD7P09564 240 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 DEFB104AQ8WTQ1 72 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 AP1S3Q96PC3 154 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 SCGB3A1Q96QR1 104 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 C20orf78Q9BR46 151 aa8.39□□□□□ -1.07
CHMP3-209ENST00000494623 BEX4Q9NWD9 120 aaPredicted RBP8.39□□□□□ -1.07
CHMP3-209ENST00000494623 TRAV12-2A0A075B6T6 113 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 A0A087WX48 190 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 KRTAP10-9P60411 292 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 ORMDL2Q53FV1 153 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 LRRK2Q5S007 2527 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 NEGR1Q7Z3B1 354 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 IGHV4OR15-8A0A075B7B6 117 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 A0A087WW49 117 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 A0A087WWL8 130 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 A6NDN8 102 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 RAB37Q96AX2 223 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 CSTL1Q9H114 145 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 VPREB3Q9UKI3 123 aa8.38□□□□□ -1.07
CHMP3-209ENST00000494623 MUC4Q99102 2169 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 HOXA3O43365 443 aaPredicted RBP8.37□□□□□ -1.07
CHMP3-209ENST00000494623 SNRPD3P62318 126 aaKnown RBP8.37□□□□□ -1.07
CHMP3-209ENST00000494623 NAA38Q9BRA0 125 aaKnown RBP8.37□□□□□ -1.07
CHMP3-209ENST00000494623 TMEM89A2RUT3 159 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 F5H697 171 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 SAMD13Q5VXD3 122 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 Q6YL49 198 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 TOMM6Q96B49 74 aa8.37□□□□□ -1.07
CHMP3-209ENST00000494623 IGHV4-31P0DP07 118 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 C2orf66Q6UXQ4 117 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 USP24Q9UPU5 2620 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 SORL1Q92673 2214 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 A0A0J9YX75 114 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 H3BRM9 83 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 H7C1H1 209 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 K7EQG2 157 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 LGALS1P09382 135 aaKnown RBP8.36□□□□□ -1.07
CHMP3-209ENST00000494623 GCSHP23434 173 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 LINC00315P59091 139 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 MAPKAPK5-AS1Q8N8E1 139 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 ZNF702PQ9H963 129 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 KIF25-AS1Q9Y6Z4 181 aa8.36□□□□□ -1.07
CHMP3-209ENST00000494623 TRBV25-1A0A075B6N4 114 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 K7EP13 123 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 HOXD3P31249 432 aaPredicted RBP8.35□□□□□ -1.07
CHMP3-209ENST00000494623 SPINK13Q1W4C9 94 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 MXRA5Q9NR99 2828 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 MDFICQ9P1T7 246 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 PTPN13Q12923 2485 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 H3BUT2 72 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 PPP1R17O96001 155 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 PLNP26678 52 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 FAM74A4Q5TZK3 123 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 CHAC1Q9BUX1 264 aa8.35□□□□□ -1.07
CHMP3-209ENST00000494623 AGRNO00468 2067 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 C9orf118A6NHY6 69 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 F8VRH5 84 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 NXPH4O95158 308 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 ELANEP08246 267 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 SUMO4Q6EEV6 95 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 ABCA12Q86UK0 2595 aa8.34□□□□□ -1.07
CHMP3-209ENST00000494623 TRAV12-1A0A0B4J245 112 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms