RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NPFFR1Q9GZQ6 430 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 MSMBP08118 114 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 S100A4P26447 101 aaKnown RBP12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 ARL6IP6Q8N6S5 226 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 CYSLTR1Q9Y271 337 aa12.54□□□□□ -0.4
CCDC88B-210ENST00000494566 C10orf99Q6UWK7 81 aa12.53□□□□□ -0.4
CCDC88B-210ENST00000494566 FAM223BA6NKX1 122 aa12.53□□□□□ -0.4
CCDC88B-210ENST00000494566 FAM223AQ8IWN6 122 aa12.53□□□□□ -0.4
CCDC88B-210ENST00000494566 C2CD3Q4AC94 2353 aa12.52□□□□□ -0.4
CCDC88B-210ENST00000494566 RBAKDNA6NC62 111 aa12.52□□□□□ -0.41
CCDC88B-210ENST00000494566 IGKV3-20P01619 116 aa12.52□□□□□ -0.41
CCDC88B-210ENST00000494566 NXT2Q9NPJ8 142 aaKnown RBP12.52□□□□□ -0.41
CCDC88B-210ENST00000494566 NBPF19A0A087WUL8 3843 aa12.52□□□□□ -0.41
CCDC88B-210ENST00000494566 IGHV7-4-1A0A0J9YVY3 117 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 GNRH2O43555 120 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 A6NDX4 124 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 G3V4G9 280 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 RNASE4P34096 147 aaKnown RBP12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 SMAGPQ0VAQ4 97 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 LAGE3Q14657 143 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 EPG5Q9HCE0 2579 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 IGHG2P01859 326 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 JPT2Q9H910 190 aa12.51□□□□□ -0.41
CCDC88B-210ENST00000494566 MYO9AB2RTY4 2548 aa12.5□□□□□ -0.41
CCDC88B-210ENST00000494566 ETDBQ3ZM63 59 aa12.5□□□□□ -0.41
CCDC88B-210ENST00000494566 Q8N8P6 123 aa12.5□□□□□ -0.41
CCDC88B-210ENST00000494566 NRACQ8N912 160 aa12.5□□□□□ -0.41
CCDC88B-210ENST00000494566 NAV2Q8IVL1 2488 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 INSL3P51460 131 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 SCGB2A2Q13296 93 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 C9orf47Q6ZRZ4 202 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 CEND1Q8N111 149 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 KLHL30-AS1Q8NEE0 82 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 SPOCK3Q9BQ16 436 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 CNFNQ9BYD5 112 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 IGHV4-59P01825 116 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 MUC4Q99102 2169 aa12.49□□□□□ -0.41
CCDC88B-210ENST00000494566 SCGB3A1Q96QR1 104 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 IGLV2-18A0A075B6J9 118 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 WNK1Q9H4A3 2382 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 TMEM238C9JI98 176 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 NDUFA4O00483 81 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 CD300EQ496F6 205 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 DPF1Q92782 380 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 ZNF479Q96JC4 524 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 RHPN1-AS1Q9BWJ2 59 aa12.48□□□□□ -0.41
CCDC88B-210ENST00000494566 CRIP2P52943 208 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-210ENST00000494566 SRSF2Q01130 221 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-210ENST00000494566 NDUFS8O00217 210 aa12.47□□□□□ -0.41
CCDC88B-210ENST00000494566 C9orf139Q6ZV77 190 aa12.47□□□□□ -0.41
CCDC88B-210ENST00000494566 PHLDA3Q9Y5J5 127 aa12.46□□□□□ -0.41
CCDC88B-210ENST00000494566 TSSC4Q9Y5U2 329 aaPredicted RBP12.46□□□□□ -0.41
CCDC88B-210ENST00000494566 A0A087WWL8 130 aa12.46□□□□□ -0.42
CCDC88B-210ENST00000494566 DEFB112Q30KQ8 113 aa12.46□□□□□ -0.42
CCDC88B-210ENST00000494566 ANXA2RQ3ZCQ2 193 aa12.46□□□□□ -0.42
CCDC88B-210ENST00000494566 ZFAND2AQ8N6M9 145 aa12.46□□□□□ -0.42
CCDC88B-210ENST00000494566 SONP18583 2426 aaKnown RBP12.46□□□□□ -0.42
CCDC88B-210ENST00000494566 SOCS3O14543 225 aa12.45□□□□□ -0.42
CCDC88B-210ENST00000494566 IGLL5B9A064 214 aa12.45□□□□□ -0.42
CCDC88B-210ENST00000494566 C12orf74Q32Q52 190 aa12.45□□□□□ -0.42
CCDC88B-210ENST00000494566 OR10J6PQ8NGY7 276 aa12.45□□□□□ -0.42
CCDC88B-210ENST00000494566 B4DSR2 109 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 SIVA1O15304 175 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 APOMO95445 188 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 HLA-DRB4P13762 266 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 FAM74A4Q5TZK3 123 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 MRPL53Q96EL3 112 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 CHTOPQ9Y3Y2 248 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 HLA-DRB4X5D2U9 266 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 SRSF1Q07955 248 aaKnown RBP eCLIP12.44□□□□□ -0.422e-7■■■■■ 28
CCDC88B-210ENST00000494566 SCGB1D4Q6XE38 83 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 PHLDA1Q8WV24 401 aaPredicted RBP12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 PLEKHB2Q96CS7 222 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 ZMAT4Q9H898 229 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 IGHV3-64A0A075B6Q5 118 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 F5H697 171 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 ATP5LO75964 103 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 NF1P21359 2839 aa12.44□□□□□ -0.42
CCDC88B-210ENST00000494566 A0A087WX48 190 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 LOC107984156A0A0G2JMH3 177 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 ARL17AQ8IVW1 177 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 RASL10AQ92737 203 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 USMG5Q96IX5 58 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 RPL39P62891 51 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 SMIM2Q9BVW6 85 aa12.43□□□□□ -0.42
CCDC88B-210ENST00000494566 UBR5O95071 2799 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 OR11H12B2RN74 326 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 IGLV1-40P01703 118 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 OR11H1Q8NG94 326 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 OR5A1Q8NGJ0 315 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 OR11H2Q8NH07 326 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 ZNF418Q8TF45 676 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 LINC00477Q96M19 166 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 DUSP14O95147 198 aaKnown RBP12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 SLC25A16P16260 332 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 AZU1P20160 251 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 BBC3Q96PG8 261 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 DUX5Q96PT3 197 aa12.42□□□□□ -0.42
CCDC88B-210ENST00000494566 PRSS29PA6NIE9 313 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms