RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SLC25A29Q8N8R3 303 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 ATP6V0E2Q8NHE4 81 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 RMI2Q96E14 147 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 MARVELD1Q9BSK0 173 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 GTSF1LQ9H1H1 148 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 TMEM167BQ9NRX6 74 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 URGCP-MRPS24S4R325 110 aa7.8□□□□□ -1.16
COL6A3-213ENST00000493475 A0A087WWC5 75 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 TRAV8-1A0A0A6YYK1 113 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 A8MWV9 139 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 GCGP01275 180 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 C1QBP02746 253 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 PLA2G1BP04054 148 aaKnown RBP7.79□□□□□ -1.16
COL6A3-213ENST00000493475 FUSP35637 526 aaKnown RBP eCLIP7.79□□□□□ -1.16
COL6A3-213ENST00000493475 KCNIP4Q6PIL6 250 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 PTH2Q96A98 100 aa7.79□□□□□ -1.16
COL6A3-213ENST00000493475 LOC100131303A0A0U1RQF7 123 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 GGTLC3B5MD39 225 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 RS1O15537 224 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 IGHV3-30P01768 117 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 IGHV3-33P01772 117 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 TCRAP04437 139 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 ARL14EPLP0DKL9 152 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 IGHV3-30-3P0DP02 117 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 IGHV3-30-5P0DP03 117 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 FGF8P55075 233 aaPredicted RBP7.78□□□□□ -1.16
COL6A3-213ENST00000493475 RAB2AP61019 212 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 GNG5P63218 68 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 CFAP126Q5VTH2 177 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 CYB561D1Q8N8Q1 229 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 SYT8Q8NBV8 401 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 KRTAP4-9Q9BYQ8 210 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 PSG8Q9UQ74 426 aa7.78□□□□□ -1.16
COL6A3-213ENST00000493475 CXorf1O96002 111 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 SMR3BP02814 79 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-213ENST00000493475 STAG3L2P0CL84 134 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 STAG3L3P0CL85 134 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 ASIPP42127 132 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 SERF2P84101 59 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 FLI1Q01543 452 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-213ENST00000493475 PIK3CD-AS1Q5SR53 167 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 ZFP2Q6ZN57 461 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 PRNTQ86SH4 94 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 TMEM75Q8N9X5 138 aa7.77□□□□□ -1.17
COL6A3-213ENST00000493475 PSMG3Q9BT73 122 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-213ENST00000493475 ACTR3CQ9C0K3 210 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-213ENST00000493475 IGHV3-73A0A0B4J1V6 119 aa7.76□□□□□ -1.17
COL6A3-213ENST00000493475 RHODO00212 210 aa7.76□□□□□ -1.17
COL6A3-213ENST00000493475 HMGB3O15347 200 aaKnown RBP7.76□□□□□ -1.17
COL6A3-213ENST00000493475 LGALSLQ3ZCW2 172 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-213ENST00000493475 HSD17B11Q8NBQ5 300 aa7.76□□□□□ -1.17
COL6A3-213ENST00000493475 OR2G3Q8NGZ4 309 aa7.76□□□□□ -1.17
COL6A3-213ENST00000493475 LRCOL1A6NCL2 159 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 FABP5P3A8MUU1 101 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 GCHFRP30047 84 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 SUMO1P63165 101 aaKnown RBP7.75□□□□□ -1.17
COL6A3-213ENST00000493475 ELOBQ15370 118 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 ZNF506Q5JVG8 444 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.75□□□□□ -1.17
COL6A3-213ENST00000493475 RAB24Q969Q5 203 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 TVP23CQ96ET8 276 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 SGK494Q96LW2 274 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 C9orf85Q96MD7 179 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 NKX6-2Q9C056 277 aaPredicted RBP7.75□□□□□ -1.17
COL6A3-213ENST00000493475 EPDR1Q9UM22 224 aa7.75□□□□□ -1.17
COL6A3-213ENST00000493475 SRRM2Q9UQ35 2752 aaKnown RBP7.74□□□□□ -1.17
COL6A3-213ENST00000493475 BORCS7-ASMTA0A0B4J1R7 106 aa7.74□□□□□ -1.17
COL6A3-213ENST00000493475 EIF3GO75821 320 aaKnown RBP eCLIP7.74□□□□□ -1.17
COL6A3-213ENST00000493475 IFNA7P01567 189 aa7.74□□□□□ -1.17
COL6A3-213ENST00000493475 INO80EQ8NBZ0 244 aaPredicted RBP7.74□□□□□ -1.17
COL6A3-213ENST00000493475 TNFSF18Q9UNG2 199 aa7.74□□□□□ -1.17
COL6A3-213ENST00000493475 HERC1Q15751 4861 aa7.74□□□□□ -1.17
COL6A3-213ENST00000493475 A0A1W2PRE2 83 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 GAGE12JA6NER3 117 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 GAGE1Q13065 139 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 GAGE4Q13068 117 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 GAGE5Q13069 117 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 GAGE13Q4V321 117 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 Q8N976 141 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 WFDC1Q9HC57 220 aa7.73□□□□□ -1.17
COL6A3-213ENST00000493475 A0A087WX48 190 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 PGPEP1LA6NFU8 196 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 OR11H4Q8NGC9 324 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 SUN5Q8TC36 379 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 HIST1H2BAQ96A08 127 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 AQP10Q96PS8 301 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 MED28Q9H204 178 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 PARLQ9H300 379 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 IL36BQ9NZH7 164 aa7.72□□□□□ -1.17
COL6A3-213ENST00000493475 RBFOX3A6NFN3 312 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 B4DEV8 164 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 RNASE3P12724 160 aaKnown RBP7.71□□□□□ -1.18
COL6A3-213ENST00000493475 ATP6V0CP27449 155 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 ZNF80P51504 273 aaPredicted RBP7.71□□□□□ -1.18
COL6A3-213ENST00000493475 UBE2G1P62253 170 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 DPPA3Q6W0C5 159 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 OR2T35Q8NGX2 323 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 DEFB104AQ8WTQ1 72 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 CHCHD7Q9BUK0 85 aa7.71□□□□□ -1.18
COL6A3-213ENST00000493475 PHLDA3Q9Y5J5 127 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms