RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 C4orf3Q8WVX3 66 aa8.03□□□□□ -1.12
USP4-214ENST00000491791 MRPS16Q9Y3D3 137 aaKnown RBP8.03□□□□□ -1.12
USP4-214ENST00000491791 SVEP1Q4LDE5 3571 aa8.03□□□□□ -1.12
USP4-214ENST00000491791 ANK2Q01484 3957 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 OR4C46A6NHA9 309 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 FCER1GP30273 86 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 RPL32P62910 135 aaKnown RBP8.02□□□□□ -1.13
USP4-214ENST00000491791 ANXA2RQ3ZCQ2 193 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 ADAMTSL5Q6ZMM2 481 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 OR2K2Q8NGT1 345 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 SNHG12Q9BXW3 62 aa8.02□□□□□ -1.13
USP4-214ENST00000491791 MUC21A0A0G2JKD1 596 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 MUC21A0A140T8X8 626 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 F6UB75 175 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 LINC01619G3V211 115 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 H3BVH4 76 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 PPP1R17O96001 155 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 RNASE3P12724 160 aaKnown RBP8.01□□□□□ -1.13
USP4-214ENST00000491791 IGLL1P15814 213 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 EDN2P20800 178 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 EVI2AP22794 236 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 TSPOP30536 169 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 SYNJ2BPP57105 145 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 SCGB2A2Q13296 93 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 KIR3DS1Q14943 382 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 MUC21Q5SSG8 566 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 SPANXN1Q5VSR9 72 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 ZNF705AQ6ZN79 300 aaPredicted RBP8.01□□□□□ -1.13
USP4-214ENST00000491791 FOXI2Q6ZQN5 318 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 Q6ZQT7 251 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 C20orf78Q9BR46 151 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 PEMTQ9UBM1 199 aa8.01□□□□□ -1.13
USP4-214ENST00000491791 C7orf71A4D174 169 aa8□□□□□ -1.13
USP4-214ENST00000491791 RNASE4P34096 147 aaKnown RBP8□□□□□ -1.13
USP4-214ENST00000491791 TCTEX1D4Q5JR98 221 aa8□□□□□ -1.13
USP4-214ENST00000491791 AMTNQ6UX39 209 aa8□□□□□ -1.13
USP4-214ENST00000491791 C12orf54Q6X4T0 127 aa8□□□□□ -1.13
USP4-214ENST00000491791 Q6ZSV7 163 aa8□□□□□ -1.13
USP4-214ENST00000491791 CLUHP3Q96NS8 147 aa8□□□□□ -1.13
USP4-214ENST00000491791 DPH3P1Q9H4G8 78 aa8□□□□□ -1.13
USP4-214ENST00000491791 C16orf95Q9H693 158 aa8□□□□□ -1.13
USP4-214ENST00000491791 KIF25-AS1Q9Y6Z4 181 aa8□□□□□ -1.13
USP4-214ENST00000491791 LOC389332A0A1B0GUA5 103 aa7.99□□□□□ -1.13
USP4-214ENST00000491791 SMKR1H3BMG3 65 aa7.99□□□□□ -1.13
USP4-214ENST00000491791 NCR2O95944 276 aa7.99□□□□□ -1.13
USP4-214ENST00000491791 C9orf85Q96MD7 179 aa7.99□□□□□ -1.13
USP4-214ENST00000491791 PHLDA3Q9Y5J5 127 aa7.99□□□□□ -1.13
USP4-214ENST00000491791 EREGO14944 169 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 GAS8-AS1O95177 125 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 S100A4P26447 101 aaKnown RBP7.98□□□□□ -1.13
USP4-214ENST00000491791 LINC00315P59091 139 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 DEFB1P60022 68 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 FHL3Q13643 280 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 FAM159AQ6UWV7 190 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 OR9G4Q8NGQ1 327 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 OR1N2Q8NGR9 330 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 IFI27L1Q96BM0 104 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 PMCHL2Q9BQD1 86 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 ZMAT4Q9H898 229 aa7.98□□□□□ -1.13
USP4-214ENST00000491791 TRAV25A0A0B4J276 109 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 DNAJC9-AS1A6NH13 148 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 HSBP1L1C9JCN9 74 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 GNRH2O43555 120 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 RNASE1P07998 156 aaKnown RBP7.97□□□□□ -1.13
USP4-214ENST00000491791 CDKN1BP46527 198 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 SSTP61278 116 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 NUTF2P61970 127 aaKnown RBP7.97□□□□□ -1.13
USP4-214ENST00000491791 MAJINQ3KP22 176 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 PIK3CD-AS1Q5SR53 167 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 ATOH7Q8N100 152 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 PTH2Q96A98 100 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 AP1S3Q96PC3 154 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 LINC00467Q9BRT7 94 aa7.97□□□□□ -1.13
USP4-214ENST00000491791 IGKV3-7A0A075B6H7 116 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 IGHV3-16A0A0C4DH30 117 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 LINC01549A6NIU2 74 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 ATP5LO75964 103 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 ZNF688P0C7X2 276 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 HLA-DRB4P13762 266 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 GATA1P15976 413 aaPredicted RBP7.96□□□□□ -1.14
USP4-214ENST00000491791 LAGE3Q14657 143 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 Q6ZN92 141 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 WFDC3Q8IUB2 231 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 OR11H1Q8NG94 326 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 RASL10AQ92737 203 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 SMIM2Q9BVW6 85 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 HLA-DRB4X5D2U9 266 aa7.96□□□□□ -1.14
USP4-214ENST00000491791 IGHV1OR15-1A0A075B7D0 117 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 TRBV6-5A0A0K0K1A5 114 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 DLEU1O43261 78 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 HNRNPA3P51991 378 aaKnown RBP7.95□□□□□ -1.14
USP4-214ENST00000491791 SLURP1P55000 103 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 ORMDL2Q53FV1 153 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.95□□□□□ -1.14
USP4-214ENST00000491791 ZNF418Q8TF45 676 aaPredicted RBP7.95□□□□□ -1.14
USP4-214ENST00000491791 EDA2RQ9HAV5 297 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 ZNF256Q9Y2P7 627 aaPredicted RBP7.95□□□□□ -1.14
USP4-214ENST00000491791 GOLT1BQ9Y3E0 138 aa7.95□□□□□ -1.14
USP4-214ENST00000491791 TRAV12-3A0A0B4J271 114 aa7.94□□□□□ -1.14
USP4-214ENST00000491791 A0A1B0GV90 55 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms