RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 ATP5G2Q06055 141 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 SPANXN1Q5VSR9 72 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 C5orf56Q8N8D9 126 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 RNF152Q8N8N0 203 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 NEXN-AS1Q8NBZ9 246 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 Q8TAT8 98 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TMEM141Q96I45 108 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TIMM17AQ99595 171 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 FOXC2Q99958 501 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 MRPL35Q9NZE8 188 aaKnown RBP4.42□□□□□ -1.7
VPS41-214ENST00000490924 MOB4Q9Y3A3 225 aa4.42□□□□□ -1.7
VPS41-214ENST00000490924 TLN1Q9Y490 2541 aaKnown RBP4.42□□□□□ -1.7
VPS41-214ENST00000490924 USP9XQ93008 2570 aaPredicted RBP4.41□□□□□ -1.7
VPS41-214ENST00000490924 TEX15Q9BXT5 2789 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 TRBV20-1A0A075B6N2 111 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 IGKV2D-26A0A0A0MRZ7 120 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 MYMXA0A1B0GTQ4 84 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 TMEM89A2RUT3 159 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 IGLL5B9A064 214 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 LYNX1G3V0Z9 82 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 SMKR1H3BMG3 65 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 J3QKU1 62 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 K7EMT4 169 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 SOCS3O14543 225 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 ATP6V0E1O15342 81 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 LYNX1P0DP58 116 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 GCSHP23434 173 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 ASIPP42127 132 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 CRYBA4P53673 196 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 FXYD2P54710 66 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 ERCC8Q13216 396 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 RRN3P1Q2M238 152 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 ZFAND2AQ8N6M9 145 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 OR10J6PQ8NGY7 276 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 LINC01560Q8TB33 94 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 ZNF479Q96JC4 524 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 MCRIP2Q9BUT9 160 aaKnown RBP4.41□□□□□ -1.7
VPS41-214ENST00000490924 EDA2RQ9HAV5 297 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 SPANXB1Q9NS25 103 aaPredicted RBP4.41□□□□□ -1.7
VPS41-214ENST00000490924 MSRB1Q9NZV6 116 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 CHTOPQ9Y3Y2 248 aaKnown RBP4.41□□□□□ -1.7
VPS41-214ENST00000490924 RELNP78509 3460 aa4.41□□□□□ -1.7
VPS41-214ENST00000490924 COL12A1Q99715 3063 aa4.4□□□□□ -1.7
VPS41-214ENST00000490924 ZNF462Q96JM2 2506 aa4.4□□□□□ -1.7
VPS41-214ENST00000490924 TRAV41A0A0B4J266 112 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 TRAV40A0A0B4J280 105 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 PRAC2D3DTV9 90 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 CCL21O00585 134 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 NPFFO15130 113 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 CIDEAO60543 219 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 SAA4P35542 130 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 UBE2D1P51668 147 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 RIPPLY3P57055 190 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 HERVK_113P61574 105 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 LMO4P61968 165 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 ADORA2A-AS1P86434 159 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 KLRD1Q13241 179 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 C12orf74Q32Q52 190 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 CD300EQ496F6 205 aaPredicted RBP4.4□□□□□ -1.71
VPS41-214ENST00000490924 TM4SF20Q53R12 229 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 PIK3CD-AS1Q5SR53 167 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 CLEC2AQ6UVW9 174 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 MTURNQ8N3F0 131 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 ZNF843Q8N446 348 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 LINC01600Q96MT4 127 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 SCGB3A1Q96QR1 104 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 APC2O95996 2303 aa4.4□□□□□ -1.71
VPS41-214ENST00000490924 ANKRD17O75179 2603 aaKnown RBP4.4□□□□□ -1.71
VPS41-214ENST00000490924 PIEZO2Q9H5I5 2752 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 SPENQ96T58 3664 aaKnown RBP4.39□□□□□ -1.71
VPS41-214ENST00000490924 SPTA1P02549 2419 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 TRBV27A0A0K0K1C4 114 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 C11orf86A6NJI1 115 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 KLLNB2CW77 178 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 TMEM238C9JI98 176 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 H3BMG7 143 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 VCYO14598 125 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 IGHV1-69P01742 117 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 IGHG2P01859 326 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 COX6B1P14854 86 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 ZFP36P26651 326 aaKnown RBP4.39□□□□□ -1.71
VPS41-214ENST00000490924 UQCRFS1P47985 274 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 DLX1P56177 255 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 RHOHQ15669 191 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 Q5PR19 223 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 CLEC19AQ6UXS0 136 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 RASL10AQ92737 203 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 C18orf15Q96N68 181 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 HIST1H4GQ99525 98 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 SIGMAR1Q99720 223 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 TMEM160Q9NX00 188 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 NHP2Q9NX24 153 aaKnown RBP4.39□□□□□ -1.71
VPS41-214ENST00000490924 SH3BGRL2Q9UJC5 107 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 CYSLTR1Q9Y271 337 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 PHLDA3Q9Y5J5 127 aa4.39□□□□□ -1.71
VPS41-214ENST00000490924 TIMM8BQ9Y5J9 83 aaPredicted RBP4.39□□□□□ -1.71
VPS41-214ENST00000490924 WNK2Q9Y3S1 2297 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 A0A0J9YX75 114 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 SAP30O75446 220 aa4.38□□□□□ -1.71
VPS41-214ENST00000490924 TRGV3P03979 118 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms