RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CACNG7P62955 275 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 DMRTA1Q5VZB9 504 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 FAM104BQ5XKR9 115 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 BAGE3Q86Y29 109 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 TMEM191AQ9H0A3 160 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 NBEAL1Q6ZS30 2694 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 NOTCH1P46531 2555 aa10.45□□□□□ -0.74
CUX1-209ENST00000487284 NUPR1O60356 82 aa10.44□□□□□ -0.74
CUX1-209ENST00000487284 BEAN1Q3B7T3 259 aa10.44□□□□□ -0.74
CUX1-209ENST00000487284 FAM159AQ6UWV7 190 aa10.44□□□□□ -0.74
CUX1-209ENST00000487284 SCRT2Q9NQ03 307 aa10.44□□□□□ -0.74
CUX1-209ENST00000487284 MSRB1Q9NZV6 116 aa10.44□□□□□ -0.74
CUX1-209ENST00000487284 TRAV12-2A0A075B6T6 113 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 FABP4P15090 132 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 CMC4P56277 68 aaPredicted RBP10.43□□□□□ -0.74
CUX1-209ENST00000487284 SSTP61278 116 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 FAM110AQ9BQ89 295 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 OR11H12B2RN74 326 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 CRXO43186 299 aaPredicted RBP10.43□□□□□ -0.74
CUX1-209ENST00000487284 GNRH2O43555 120 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 CD7P09564 240 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 RNASE3P12724 160 aaKnown RBP10.43□□□□□ -0.74
CUX1-209ENST00000487284 S100A4P26447 101 aaKnown RBP10.43□□□□□ -0.74
CUX1-209ENST00000487284 AMN1Q8IY45 258 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 TMEM18Q96B42 140 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 RCHY1Q96PM5 261 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 U3KQK5 164 aa10.43□□□□□ -0.74
CUX1-209ENST00000487284 G3V4G9 280 aa10.42□□□□□ -0.74
CUX1-209ENST00000487284 NXPH4O95158 308 aa10.42□□□□□ -0.74
CUX1-209ENST00000487284 IQCJQ1A5X6 159 aa10.42□□□□□ -0.74
CUX1-209ENST00000487284 SPANXN1Q5VSR9 72 aa10.42□□□□□ -0.74
CUX1-209ENST00000487284 IGHV1OR15-1A0A075B7D0 117 aa10.41□□□□□ -0.74
CUX1-209ENST00000487284 SMIM6P0DI80 62 aa10.41□□□□□ -0.74
CUX1-209ENST00000487284 MRPL51Q4U2R6 128 aaKnown RBP10.41□□□□□ -0.74
CUX1-209ENST00000487284 LINC00518Q8N0U6 118 aa10.41□□□□□ -0.74
CUX1-209ENST00000487284 OR10D4PQ8NGN7 298 aa10.41□□□□□ -0.74
CUX1-209ENST00000487284 PACRGQ96M98 296 aaPredicted RBP10.41□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1A1P0DJD3 496 aaKnown RBP10.4□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1CP0DJD4 496 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 FXYD7P58549 80 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 RBMY1FQ15415 496 aaKnown RBP10.4□□□□□ -0.74
CUX1-209ENST00000487284 SAMD5Q5TGI4 173 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 TRPT1Q86TN4 253 aaKnown RBP10.4□□□□□ -0.74
CUX1-209ENST00000487284 RNF185Q96GF1 192 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 WFDC10AQ9H1F0 79 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 C19orf73Q9NVV2 129 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 PHLDA3Q9Y5J5 127 aa10.4□□□□□ -0.74
CUX1-209ENST00000487284 IGHV3-16A0A0C4DH30 117 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 RAB4AP20338 218 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 KRTAP10-11P60412 298 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 EGFEM1PQ0D2K5 195 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 ORMDL3Q8N138 153 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 C9orf85Q96MD7 179 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 TIMM8BQ9Y5J9 83 aaPredicted RBP10.39□□□□□ -0.75
CUX1-209ENST00000487284 DNAH3Q8TD57 4116 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 D6R8Y8 96 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 PPBPP02775 128 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 EVI2AP22794 236 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 SMIM15Q7Z3B0 74 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 STHQ8IWL8 128 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 URB1-AS1Q96HZ7 61 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 C20orf144Q9BQM9 153 aa10.39□□□□□ -0.75
CUX1-209ENST00000487284 M0R381 172 aa10.38□□□□□ -0.75
CUX1-209ENST00000487284 GTSCR1Q86UQ5 136 aa10.38□□□□□ -0.75
CUX1-209ENST00000487284 Q8N1Y9 231 aa10.38□□□□□ -0.75
CUX1-209ENST00000487284 PRELID3AQ96N28 172 aa10.38□□□□□ -0.75
CUX1-209ENST00000487284 TRGV11A0A075B6L2 103 aa10.37□□□□□ -0.75
CUX1-209ENST00000487284 INSP01308 110 aa10.37□□□□□ -0.75
CUX1-209ENST00000487284 NIT1Q86X76 327 aa10.37□□□□□ -0.75
CUX1-209ENST00000487284 LINC00467Q9BRT7 94 aa10.37□□□□□ -0.75
CUX1-209ENST00000487284 SPRY2O43597 315 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 CKS2P33552 79 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 PYY3Q5JQD4 70 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 RNASEKQ6P5S7 137 aaKnown RBP10.36□□□□□ -0.75
CUX1-209ENST00000487284 DEFB125Q8N687 156 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 CHCHD1Q96BP2 118 aaKnown RBP10.36□□□□□ -0.75
CUX1-209ENST00000487284 C12orf57Q99622 126 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 SAMD10Q9BYL1 202 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 MDFICQ9P1T7 246 aa10.36□□□□□ -0.75
CUX1-209ENST00000487284 HSBP1O75506 76 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 AMTP48728 403 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 AP1S3Q96PC3 154 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 LAMTOR2Q9Y2Q5 125 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 SMKR1H3BMG3 65 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 NCR2O95944 276 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 NPYP01303 97 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 DPH3P1Q9H4G8 78 aa10.35□□□□□ -0.75
CUX1-209ENST00000487284 CBY3A6NI87 242 aa10.34□□□□□ -0.75
CUX1-209ENST00000487284 LINC00614P0C842 121 aa10.34□□□□□ -0.75
CUX1-209ENST00000487284 PMCHP20382 165 aa10.34□□□□□ -0.75
CUX1-209ENST00000487284 NUTF2P61970 127 aaKnown RBP10.34□□□□□ -0.75
CUX1-209ENST00000487284 ZMAT5Q9UDW3 170 aaKnown RBP10.34□□□□□ -0.75
CUX1-209ENST00000487284 NACAE9PAV3 2078 aa10.33□□□□□ -0.76
CUX1-209ENST00000487284 JOSD1Q15040 202 aaPredicted RBP10.33□□□□□ -0.76
CUX1-209ENST00000487284 Q6ZWC4 215 aa10.33□□□□□ -0.76
CUX1-209ENST00000487284 C14orf178Q8N769 122 aaPredicted RBP10.33□□□□□ -0.76
CUX1-209ENST00000487284 SYT8Q8NBV8 401 aa10.33□□□□□ -0.76
CUX1-209ENST00000487284 MRAP2Q96G30 205 aa10.33□□□□□ -0.76
CUX1-209ENST00000487284 XCL2Q9UBD3 114 aa10.33□□□□□ -0.76
CUX1-209ENST00000487284 KIF25-AS1Q9Y6Z4 181 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms