RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 DEFB1P60022 68 aa14.31□□□□□ -0.12
CCDC88B-207ENST00000479965 PRO1854Q9UHT4 67 aa14.31□□□□□ -0.12
CCDC88B-207ENST00000479965 Q1RN00 199 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 DEFB124Q8NES8 71 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 AJUBAQ96IF1 538 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 C16orf92Q96LL3 132 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 BEX4Q9NWD9 120 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 TRAV4A0A0B4J268 109 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 C1orf122Q6ZSJ8 110 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 TTC32Q5I0X7 151 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 PLA2G2CQ5R387 149 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 DPH3P1Q9H4G8 78 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 TP53TG1Q9Y2A0 90 aa14.3□□□□□ -0.12
CCDC88B-207ENST00000479965 TSPEAR-AS2P59090 65 aa14.29□□□□□ -0.12
CCDC88B-207ENST00000479965 CRLF1O75462 422 aa14.29□□□□□ -0.12
CCDC88B-207ENST00000479965 CRYGDP07320 174 aa14.29□□□□□ -0.12
CCDC88B-207ENST00000479965 SPTBN2O15020 2390 aa14.29□□□□□ -0.12
CCDC88B-207ENST00000479965 IGHV3-64A0A075B6Q5 118 aa14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 RPL39P62891 51 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 NTN5Q8WTR8 489 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 IGHV3-30P01768 117 aa14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 NHLRC4P0CG21 123 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 IGHV3-30-5P0DP03 117 aa14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 ZFAND3Q9H8U3 227 aa14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 IGHV4-39P01824 125 aa14.28□□□□□ -0.12
CCDC88B-207ENST00000479965 CCDC179H3BU77 68 aa14.27□□□□□ -0.12
CCDC88B-207ENST00000479965 IGHV4-4A0A075B6R2 117 aa14.27□□□□□ -0.13
CCDC88B-207ENST00000479965 IGKV3-7A0A075B6H7 116 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 TRAV2A0A0B4J234 112 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 A4D1N5 150 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 TIMD4Q96H15 378 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 IGHV7-81A0A0B4J1V7 117 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 NDUFV3P56181 108 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 METTL26Q96S19 204 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 IGLV4-69A0A075B6H9 119 aa14.26□□□□□ -0.13
CCDC88B-207ENST00000479965 BDP1A6H8Y1 2624 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 LGALS3P17931 250 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 ASIPP42127 132 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 NBASA2RRP1 2371 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 CLPSL1A2RUU4 121 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 GNRH2O43555 120 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 SMIM20Q8N5G0 67 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 CITED1Q99966 193 aa14.25□□□□□ -0.13
CCDC88B-207ENST00000479965 ANKRD11Q6UB99 2663 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 SBSPONQ8IVN8 264 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE12JA6NER3 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 B9A039 149 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 G3V318 75 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 RHODO00212 210 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE7O76087 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 TSHBP01222 138 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE12FP0CL80 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE12GP0CL81 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE12IP0CL82 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 GAGE4Q13068 117 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 SLC25A29Q8N8R3 303 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 F5H697 171 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 C9orf47Q6ZRZ4 202 aa14.24□□□□□ -0.13
CCDC88B-207ENST00000479965 RNASE4P34096 147 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-207ENST00000479965 PMVKQ15126 192 aa14.23□□□□□ -0.13
CCDC88B-207ENST00000479965 RPL11P62913 178 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-207ENST00000479965 TCF15Q12870 199 aa14.23□□□□□ -0.13
CCDC88B-207ENST00000479965 TEX49A0A1B0GTD5 131 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 RNF223E7ERA6 249 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 J3QQQ9 107 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 CD3EP07766 207 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 IFITM1P13164 125 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 Q8N1Y9 231 aa14.22□□□□□ -0.13
CCDC88B-207ENST00000479965 SRD5A1P18405 259 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 VMO1Q7Z5L0 202 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 LINC01560Q8TB33 94 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 ATP6V0E1O15342 81 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 ELANEP08246 267 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 HERV-K104P63124 156 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 ZNRF2Q8NHG8 242 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 C20orf173Q96LM9 149 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 CCDC140Q96MF4 163 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 JPT2Q9H910 190 aa14.21□□□□□ -0.13
CCDC88B-207ENST00000479965 ANKHD1Q8IWZ3 2542 aaKnown RBP14.21□□□□□ -0.14
CCDC88B-207ENST00000479965 PAPPA-AS1Q5QFB9 102 aa14.21□□□□□ -0.14
CCDC88B-207ENST00000479965 SHISA2Q6UWI4 295 aa14.21□□□□□ -0.14
CCDC88B-207ENST00000479965 SPTA1P02549 2419 aa14.21□□□□□ -0.14
CCDC88B-207ENST00000479965 TRAV21A0A0B4J279 112 aa14.2□□□□□ -0.14
CCDC88B-207ENST00000479965 A0A087WWL8 130 aa14.2□□□□□ -0.14
CCDC88B-207ENST00000479965 F6UB75 175 aa14.2□□□□□ -0.14
CCDC88B-207ENST00000479965 OPRPNQ99935 248 aaPredicted RBP14.2□□□□□ -0.14
CCDC88B-207ENST00000479965 TRBV7-9A0A0J9YWB2 115 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 IGHV3-33P01772 117 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 IGFL3Q6UXB1 125 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 GPHB5Q86YW7 130 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 ZNF256Q9Y2P7 627 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 TRAV8-4A0A0B4J246 113 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 FAM159AQ6UWV7 190 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 C15orf53Q8NAA6 179 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 OR10J6PQ8NGY7 276 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 LINC00527Q9UJ94 153 aa14.19□□□□□ -0.14
CCDC88B-207ENST00000479965 MUSTN1Q8IVN3 82 aa14.18□□□□□ -0.14
CCDC88B-207ENST00000479965 LY6G5BQ8NDX9 201 aa14.18□□□□□ -0.14
CCDC88B-207ENST00000479965 FAM74A4Q5TZK3 123 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms