RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 LOC100130705A0A1B0GUX0 176 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 MYL12BO14950 172 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 MPDU1O75352 247 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 HSMCR30P0CW71 290 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 RPL13AP40429 203 aaKnown RBP2.52□□□□□ -2.01
VPS50-214ENST00000477935 ZNF90Q03938 601 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 KIAA0087Q14695 138 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 TRAM1Q15629 374 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 GPR107Q5VW38 600 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 ZNF546Q86UE3 836 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 LGI3Q8N145 548 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 SPACA4Q8TDM5 124 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 MRGPRFQ96AM1 343 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 PRADC1Q9BSG0 188 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 ATG5Q9H1Y0 275 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 MED4Q9NPJ6 270 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 MRPL16Q9NX20 251 aaKnown RBP2.52□□□□□ -2.01
VPS50-214ENST00000477935 POMPQ9Y244 141 aa2.52□□□□□ -2.01
VPS50-214ENST00000477935 USH2AO75445 5202 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 IGLV1-50A0A075B6I6 118 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TRAV1-1A0A0B4J248 108 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TRAV4A0A0B4J268 109 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TRBV6-4A0A1B0GX49 114 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 C7orf71A4D174 169 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 PDCD5O14737 125 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 IFNA7P01567 189 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 IGKV1-39P01597 117 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 IGKV1D-39P04432 117 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 NMBP08949 121 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 SFTA3P0C7M3 94 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 CRYGAP11844 174 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 CXCL2P19875 107 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 PSMA1P25786 263 aaKnown RBP2.51□□□□□ -2.01
VPS50-214ENST00000477935 AKR1C2P52895 323 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 RAB31Q13636 194 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 ARL6IP6Q8N6S5 226 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 OR4C5Q8NGB2 326 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 OR10P1Q8NGE3 313 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 APH1BQ8WW43 257 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 UBE2WQ96B02 151 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TRGV9Q99603 122 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 CHCHD7Q9BUK0 85 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TMEM147Q9BVK8 224 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 TMEM222Q9H0R3 208 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.51□□□□□ -2.01
VPS50-214ENST00000477935 SSR3Q9UNL2 185 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 KCNIP3Q9Y2W7 256 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 U3KQ87 197 aa2.51□□□□□ -2.01
VPS50-214ENST00000477935 IGKV1D-37A0A075B6S9 117 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 PGPA6NDG6 321 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 IFITM5A6NNB3 132 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 WBP4O75554 376 aaKnown RBP2.5□□□□□ -2.01
VPS50-214ENST00000477935 RHOHQ15669 191 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 TMEM183BQ1AE95 376 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 NIT1Q86X76 327 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 TMEM183AQ8IXX5 376 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 TMEM75Q8N9X5 138 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 SLC50A1Q9BRV3 221 aa2.5□□□□□ -2.01
VPS50-214ENST00000477935 ZNF2Q9BSG1 426 aaPredicted RBP2.5□□□□□ -2.01
VPS50-214ENST00000477935 FCGBPQ9Y6R7 5405 aaPredicted RBP2.49□□□□□ -2.01
VPS50-214ENST00000477935 A0A087WX48 190 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 ANKRD65E5RJM6 399 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 IGKV1-5P01602 117 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 GPX1P07203 203 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 ORM2P19652 201 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 NMUP48645 174 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 FGF8P55075 233 aaPredicted RBP2.49□□□□□ -2.01
VPS50-214ENST00000477935 POLR2GP62487 172 aaKnown RBP eCLIP2.49□□□□□ -2.01
VPS50-214ENST00000477935 DNAL1Q4LDG9 190 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 NMSQ5H8A3 153 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 FAM162BQ5T6X4 162 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 LCN15Q6UWW0 184 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 TMEM91Q6ZNR0 172 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 CAMK2N1Q7Z7J9 78 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 C10orf67Q8IYJ2 551 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 SLC25A29Q8N8R3 303 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 OR1S1Q8NH92 325 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 LINC00477Q96M19 166 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 SHANK2-AS3Q9BTD1 123 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 PARD6GQ9BYG4 376 aaPredicted RBP2.49□□□□□ -2.01
VPS50-214ENST00000477935 AUNIPQ9H7T9 357 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 LINC00474Q9P2X8 69 aa2.49□□□□□ -2.01
VPS50-214ENST00000477935 A0A0A6YYH2 397 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 TRAV1-2A0A0B4J238 106 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 A6NJ64 397 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 CEBPZOSA8MTT3 80 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 GYG2O15488 501 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 TNFAIP8O95379 198 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 TCRBP04435 133 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 RNASE4P34096 147 aaKnown RBP2.48□□□□□ -2.01
VPS50-214ENST00000477935 TAS2R46P59540 309 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 MIAQ16674 131 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 TPRXLQ17RH7 258 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 DEFB116Q30KQ4 102 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 FER1L6-AS1Q8NA97 138 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 RNASE11Q8TAA1 199 aaKnown RBP2.48□□□□□ -2.01
VPS50-214ENST00000477935 LHFPL5Q8TAF8 219 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 DIRC1Q969H9 104 aa2.48□□□□□ -2.01
VPS50-214ENST00000477935 MND1Q9BWT6 205 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms