RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ATP6V0E2Q8NHE4 81 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 KRTAP2-4Q9BYR9 128 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 KRTAP2-1Q9BYU5 128 aa0.77□□□□□ -2.29
VPS50-212ENST00000476413 BLMP54132 1417 aaPredicted RBP0.77□□□□□ -2.29
VPS50-212ENST00000476413 CKS1BP61024 79 aa0.76□□□□□ -2.29
VPS50-212ENST00000476413 HIST1H1AQ02539 215 aaPredicted RBP0.76□□□□□ -2.29
VPS50-212ENST00000476413 KLKP1Q107X0 134 aa0.76□□□□□ -2.29
VPS50-212ENST00000476413 ALX1Q15699 326 aa0.76□□□□□ -2.29
VPS50-212ENST00000476413 RBP4P02753 201 aa0.75□□□□□ -2.29
VPS50-212ENST00000476413 ATP11AUNQ6ZP68 121 aa0.75□□□□□ -2.29
VPS50-212ENST00000476413 PLAC8Q9NZF1 115 aa0.75□□□□□ -2.29
VPS50-212ENST00000476413 MYH13Q9UKX3 1938 aa0.75□□□□□ -2.29
VPS50-212ENST00000476413 CCDC171Q6TFL3 1326 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 MAP2P11137 1827 aaKnown RBP0.74□□□□□ -2.29
VPS50-212ENST00000476413 TRAV2A0A0B4J234 112 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 LZICQ8WZA0 190 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 SMR3AQ99954 134 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 GSKIPQ9P0R6 139 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 NOP16Q9Y3C1 178 aaKnown RBP0.74□□□□□ -2.29
VPS50-212ENST00000476413 CEP152O94986 1710 aa0.74□□□□□ -2.29
VPS50-212ENST00000476413 PTPRMP28827 1452 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 A0A096LNT2 108 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 M0R2P5 195 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 IGLC6P0CF74 106 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 DYNLRB2Q8TF09 96 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 KIF13AQ9H1H9 1805 aa0.73□□□□□ -2.29
VPS50-212ENST00000476413 SLC25A6P12236 298 aa0.72□□□□□ -2.29
VPS50-212ENST00000476413 TMEM14BQ9NUH8 114 aa0.72□□□□□ -2.29
VPS50-212ENST00000476413 RBBP6Q7Z6E9 1792 aaKnown RBP0.72□□□□□ -2.29
VPS50-212ENST00000476413 OVOS2A0A0J9YW53 1432 aa0.72□□□□□ -2.29
VPS50-212ENST00000476413 OVOS2Q6IE36 1432 aa0.72□□□□□ -2.29
VPS50-212ENST00000476413 TANC1Q9C0D5 1861 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 KCPQ6ZWJ8 1503 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 J3QR89 54 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 YPEL1O60688 119 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 ERCC6Q03468 1493 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 ZNF142P52746 1687 aaPredicted RBP0.71□□□□□ -2.3
VPS50-212ENST00000476413 ABCA4P78363 2273 aa0.71□□□□□ -2.3
VPS50-212ENST00000476413 TRBV20-1A0A075B6N2 111 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 FAM236AA0A1B0GUQ0 79 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 FAM236BA0A1B0GV22 79 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 OR2T2Q6IF00 324 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 MMGT1Q8N4V1 131 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 VPS25Q9BRG1 176 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 SPAG17Q6Q759 2223 aa0.7□□□□□ -2.3
VPS50-212ENST00000476413 TEX49A0A1B0GTD5 131 aa0.69□□□□□ -2.3
VPS50-212ENST00000476413 APOC1P02654 83 aa0.69□□□□□ -2.3
VPS50-212ENST00000476413 MPC1LP0DKB6 136 aa0.69□□□□□ -2.3
VPS50-212ENST00000476413 MYH6P13533 1939 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 J3QLW9 94 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 TSPAN19P0C672 248 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 LINC00694P0DN24 101 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 PYYP10082 97 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 NCS1P62166 190 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 PPP1R1CQ8WVI7 109 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 SMIM3Q9BZL3 60 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 NAV3Q8IVL0 2385 aa0.68□□□□□ -2.3
VPS50-212ENST00000476413 ABCA1O95477 2261 aa0.67□□□□□ -2.3
VPS50-212ENST00000476413 CTAGE3PQ8IX95 158 aa0.67□□□□□ -2.3
VPS50-212ENST00000476413 DISP2A7MBM2 1401 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 PRG4Q92954 1404 aaPredicted RBP0.66□□□□□ -2.3
VPS50-212ENST00000476413 M0R129 80 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 M0R2Z0 102 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 SMCO1Q147U7 214 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 MAFIPQ8WZ33 124 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 IFI27L1Q96BM0 104 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 TMEM141Q96I45 108 aa0.66□□□□□ -2.3
VPS50-212ENST00000476413 PLXNA1Q9UIW2 1896 aa0.65□□□□□ -2.3
VPS50-212ENST00000476413 ELOF1P60002 83 aaKnown RBP0.65□□□□□ -2.31
VPS50-212ENST00000476413 EMX2Q04743 252 aa0.65□□□□□ -2.31
VPS50-212ENST00000476413 SAR1AQ9NR31 198 aa0.65□□□□□ -2.31
VPS50-212ENST00000476413 A6NIN4 97 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 PITX3O75364 302 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 NDUFA11Q86Y39 141 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 PFDN5Q99471 154 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 COPZ2Q9P299 210 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 PAIP2BQ9ULR5 123 aaKnown RBP0.64□□□□□ -2.31
VPS50-212ENST00000476413 TNCP24821 2201 aa0.64□□□□□ -2.31
VPS50-212ENST00000476413 PHGR1C9JFL3 82 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 K7ERU9 68 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 COX4I1P13073 169 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 LINC01545Q5VT33 79 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 MIC13Q5XKP0 118 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 TSKUQ8WUA8 353 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 COA4Q9NYJ1 87 aa0.63□□□□□ -2.31
VPS50-212ENST00000476413 MUC22E2RYF6 1773 aaPredicted RBP0.62□□□□□ -2.31
VPS50-212ENST00000476413 ADGRB1O14514 1584 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 PIGBOS1A0A0B4J2F0 54 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 NPC2P61916 151 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 SMIM21Q3B7S5 101 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 RPL7L1Q6DKI1 246 aaKnown RBP0.62□□□□□ -2.31
VPS50-212ENST00000476413 TCEAL4Q96EI5 215 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 PSMG3Q9BT73 122 aaPredicted RBP0.62□□□□□ -2.31
VPS50-212ENST00000476413 ERG28Q9UKR5 140 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 MED13LQ71F56 2210 aa0.62□□□□□ -2.31
VPS50-212ENST00000476413 TRAV12-2A0A075B6T6 113 aa0.61□□□□□ -2.31
VPS50-212ENST00000476413 CCDC179H3BU77 68 aa0.61□□□□□ -2.31
VPS50-212ENST00000476413 CCDC58Q4VC31 144 aa0.61□□□□□ -2.31
VPS50-212ENST00000476413 TSTD1Q8NFU3 115 aa0.61□□□□□ -2.31
VPS50-212ENST00000476413 BET1LQ9NYM9 111 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms