RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 TFF2Q03403 129 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 C15orf32Q32M92 178 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 ODF3L2Q3SX64 289 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 ZNF497Q6ZNH5 498 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 LINC00574Q9H8X3 128 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 PLXNB2O15031 1838 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 PSENENQ9NZ42 101 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 COL11A1P12107 1806 aaPredicted RBP2.49□□□□□ -2.01
UBR3-208ENST00000474426 SPTBP11277 2137 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 IGKV3D-20A0A0C4DH25 116 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 K7EQG2 157 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 ATP6V0E1O15342 81 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 NDUFC1O43677 76 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 DYNLT1P63172 113 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 VMO1Q7Z5L0 202 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 CYYR1Q96J86 154 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 HIST1H4GQ99525 98 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 KRTAP3-3Q9BYR6 98 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 KRTAP3-2Q9BYR7 98 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 NDUFA12Q9UI09 145 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 MUC4Q99102 2169 aa2.49□□□□□ -2.01
UBR3-208ENST00000474426 A0A1B0GWA3 101 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV4-34P06331 123 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 HMGA1P17096 107 aaKnown RBP2.48□□□□□ -2.01
UBR3-208ENST00000474426 Q6ZR03 302 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 CCL28Q9NRJ3 127 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 UBE2D4Q9Y2X8 147 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 TET1Q8NFU7 2136 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 ZNF831Q5JPB2 1677 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 TIAM2Q8IVF5 1701 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV3OR16-12A0A075B7B8 117 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGLV3-32A0A0A0MS00 114 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV1-45A0A0A0MS14 117 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 TRAV3A0A0B4J244 114 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 H7C423 109 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 SPINK4O60575 86 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV1-2P23083 117 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 FXYD6P3P58550 94 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 PFN4Q8NHR9 129 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 DYNLRB1Q9NP97 96 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 GOLGA4Q13439 2230 aaKnown RBP2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV1OR15-1A0A075B7D0 117 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 J3QLW9 94 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 IGHV3-43DP0DP04 118 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 OSTCQ9NRP0 149 aa2.48□□□□□ -2.01
UBR3-208ENST00000474426 A0A087WVE0 104 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 A0A096LNJ9 63 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 TRAV22A0A0B4J277 110 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 IGKV1-39P01597 117 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 IGKV1D-39P04432 117 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 HMGN2P05204 90 aaKnown RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 MIFP14174 115 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 NOVP48745 357 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 SERF2P84101 59 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 Q0VFX4 171 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 CUL9Q8IWT3 2517 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 F8W735 103 aaPredicted RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 CGB3P0DN86 165 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 CGB7P0DN87 165 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 ATXN8Q156A1 80 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 FAM168AQ92567 244 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 BCE1O60756 84 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 LY6G6DO95868 133 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 IFI6P09912 130 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 CCL5P13501 91 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 IFI27P40305 119 aaPredicted RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 Q5VV11 94 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 C2orf82Q6UX34 121 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 C8orf49Q96NF6 230 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 PATE3B3GLJ2 98 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 HCG22E2RYF7 251 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 ZNF32P17041 273 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 ZFP36P26651 326 aaKnown RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 FHL1Q13642 323 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 MRPL51Q4U2R6 128 aaKnown RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 Q6JHZ5 121 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 SLC48A1Q6P1K1 146 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 ZNF818PQ6ZRF7 136 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 RMI2Q96E14 147 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 PLA2G12AQ9BZM1 189 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 MKI67P46013 3256 aaKnown RBP2.47□□□□□ -2.01
UBR3-208ENST00000474426 SDK2Q58EX2 2172 aa2.47□□□□□ -2.01
UBR3-208ENST00000474426 TMEM223A0PJW6 202 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 IGKV1D-33P01593 117 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 IGKV1-33P01594 117 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 IGLV1-51P01701 117 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 PRSS2P07478 247 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 NANOS2P60321 138 aaKnown RBP2.46□□□□□ -2.02
UBR3-208ENST00000474426 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.46□□□□□ -2.02
UBR3-208ENST00000474426 Q6ZTC4 211 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 FAM104AQ969W3 186 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 C7orf69Q9H7B7 122 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 FGF22Q9HCT0 170 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 PHLDA3Q9Y5J5 127 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 BAALC-AS2P0C853 105 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 KRTAP27-1Q3LI81 207 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 SPTSSBQ8NFR3 76 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 TMEM141Q96I45 108 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 TIMM21Q9BVV7 248 aa2.46□□□□□ -2.02
UBR3-208ENST00000474426 IGKV1-6A0A0C4DH72 117 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms