RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 C11orf86A6NJI1 115 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 A8MWV9 139 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 ARL3P36405 182 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 UBE2D1P51668 147 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 SYT8Q8NBV8 401 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 CCDC140Q96MF4 163 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 TTTY13Q9BZ97 58 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 C11orf21Q9P2W6 132 aa4.68□□□□□ -1.66
HERC4-209ENST00000473533 TRAV41A0A0B4J266 112 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 PRSS29PA6NIE9 313 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 NXPH4O95158 308 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 UCNP55089 124 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 CKS1BP61024 79 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 CFAP126Q5VTH2 177 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 APRG1Q8IVJ8 170 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 RASL10AQ92737 203 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 PRO0461Q9UI25 63 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 TLN1Q9Y490 2541 aaKnown RBP4.67□□□□□ -1.66
HERC4-209ENST00000473533 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.67□□□□□ -1.66
HERC4-209ENST00000473533 TRAV26-2A0A0B4J265 109 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 LOC107984156A0A0G2JMH3 177 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 LGALS3P17931 250 aaKnown RBP4.67□□□□□ -1.66
HERC4-209ENST00000473533 TEN1Q86WV5 123 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 ARL17AQ8IVW1 177 aa4.67□□□□□ -1.66
HERC4-209ENST00000473533 CCL21O00585 134 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 GAS8-AS1O95177 125 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 RHOHQ15669 191 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 ZNF418Q8TF45 676 aaPredicted RBP4.66□□□□□ -1.66
HERC4-209ENST00000473533 NPFFO15130 113 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 PSMB2P49721 201 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 UBE2D3P61077 147 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 UBE2D2P62837 147 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 FAM159AQ6UWV7 190 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 IGF2RP11717 2491 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 IGHV3-35A0A0C4DH35 117 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 K7ENP7 123 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 IGHV1-69P01742 117 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 CRYBA4P53673 196 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 MORN3Q6PF18 240 aaPredicted RBP4.66□□□□□ -1.66
HERC4-209ENST00000473533 ZFAND2AQ8N6M9 145 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 C5orf56Q8N8D9 126 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 PLEKHB2Q96CS7 222 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 ODF3Q96PU9 254 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 KLK15Q9H2R5 256 aa4.66□□□□□ -1.66
HERC4-209ENST00000473533 TRBV6-5A0A0K0K1A5 114 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 SCGB1C2P0DMR2 95 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 SAA4P35542 130 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 SH2D6Q7Z4S9 175 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 C14orf178Q8N769 122 aaPredicted RBP4.65□□□□□ -1.66
HERC4-209ENST00000473533 SPTBN4Q9H254 2564 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 IGHV3-66A0A0C4DH42 116 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 ANXA2RQ3ZCQ2 193 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 Q5PR19 223 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 C10orf126Q8N4M7 172 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 PRO1854Q9UHT4 67 aa4.65□□□□□ -1.66
HERC4-209ENST00000473533 IGHV3OR16-8A0A075B7F1 116 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 TSPAN13O95857 204 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 COX6B1P14854 86 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 AMTNQ6UX39 209 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 NDUFA11Q86Y39 141 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 SLC25A29Q8N8R3 303 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 FAM19A4Q96LR4 140 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 C2CD3Q4AC94 2353 aa4.65□□□□□ -1.67
HERC4-209ENST00000473533 ZNF688P0C7X2 276 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 KLRB1Q12918 225 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 SBSPONQ8IVN8 264 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 TP53TG1Q9Y2A0 90 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 A0A0B4J2C4 111 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 A0A0J9YX75 114 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 A0A0J9YY99 117 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 K7EMT4 169 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 LEPROTO15243 131 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 SPINK8P0C7L1 97 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 RNASE4P34096 147 aaKnown RBP4.64□□□□□ -1.67
HERC4-209ENST00000473533 CLEC2AQ6UVW9 174 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 ZFP2Q6ZN57 461 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 ANKRD11Q6UB99 2663 aaPredicted RBP4.64□□□□□ -1.67
HERC4-209ENST00000473533 IGF1P05019 195 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 CD7P09564 240 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 P0DMU3 169 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 FAM231AP0DMU4 169 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 FAM231CP0DMU5 169 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 TMEM170BQ5T4T1 132 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 TRPT1Q86TN4 253 aaKnown RBP4.64□□□□□ -1.67
HERC4-209ENST00000473533 NFE4Q86UQ8 179 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 SPANXDQ9BXN6 97 aa4.64□□□□□ -1.67
HERC4-209ENST00000473533 PTPN13Q12923 2485 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 TRBV27A0A0K0K1C4 114 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 SDHAF1A6NFY7 115 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 G3V318 75 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 J3QQQ9 107 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 LGALS9O00182 355 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 SOCS3O14543 225 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 POLR2KP53803 58 aaKnown RBP4.63□□□□□ -1.67
HERC4-209ENST00000473533 RPL11P62913 178 aaKnown RBP4.63□□□□□ -1.67
HERC4-209ENST00000473533 ATXN8Q156A1 80 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 NSUN5P1Q3KNT7 163 aa4.63□□□□□ -1.67
HERC4-209ENST00000473533 RPL39LQ96EH5 51 aaKnown RBP4.63□□□□□ -1.67
HERC4-209ENST00000473533 GEMIN7Q9H840 131 aaKnown RBP4.63□□□□□ -1.67
HERC4-209ENST00000473533 ERG28Q9UKR5 140 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms