RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 NUDT11Q96G61 164 aa6.45□□□□□ -1.38
SF3A1-206ENST00000471037 FAM210BQ96KR6 192 aa6.45□□□□□ -1.38
SF3A1-206ENST00000471037 RNASE7Q9H1E1 156 aaKnown RBP6.45□□□□□ -1.38
SF3A1-206ENST00000471037 XCL2Q9UBD3 114 aa6.45□□□□□ -1.38
SF3A1-206ENST00000471037 TRAV12-3A0A0B4J271 114 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 XKRY2A2RUG3 117 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 C7orf77A4D0Y5 90 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 TMEM189A5PLL7 270 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 ZNF705GA8MUZ8 300 aaPredicted RBP6.44□□□□□ -1.38
SF3A1-206ENST00000471037 M0R2N4 97 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 GATCO43716 136 aaKnown RBP6.44□□□□□ -1.38
SF3A1-206ENST00000471037 RPS20P60866 119 aaKnown RBP6.44□□□□□ -1.38
SF3A1-206ENST00000471037 RNF212Q495C1 297 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 PYGO2Q9BRQ0 406 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 CTDSP1Q9GZU7 261 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 RPP21Q9H633 154 aaKnown RBP6.44□□□□□ -1.38
SF3A1-206ENST00000471037 GOLT1BQ9Y3E0 138 aa6.44□□□□□ -1.38
SF3A1-206ENST00000471037 MUC4Q99102 2169 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 TEX48A0A1B0GUV7 120 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 SMIM9A6NGZ8 99 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 A8MWL6 223 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 H7BYZ3 331 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 ORM1P02763 201 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 CXCL1P09341 107 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 SPART-AS1P0CW21 52 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 TDRG1Q3Y452 100 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 FAM159AQ6UWV7 190 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 OR2D3Q8NGH3 330 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 KCNS1Q96KK3 526 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 LINC00467Q9BRT7 94 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 RPS10P5Q9NQ39 176 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 TMEM242Q9NWH2 141 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 NAGKQ9UJ70 344 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 V9GYV3 84 aa6.43□□□□□ -1.38
SF3A1-206ENST00000471037 IGHV1OR15-1A0A075B7D0 117 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 IGKV3D-20A0A0C4DH25 116 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 ANXA2RQ3ZCQ2 193 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 ZNF575Q86XF7 245 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 UBE2DNLQ8IWF7 75 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 LINC01587Q99440 93 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 TMEM208Q9BTX3 173 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 KRTAP4-5Q9BYR2 181 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 C11orf21Q9P2W6 132 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 DKK2Q9UBU2 259 aa6.42□□□□□ -1.38
SF3A1-206ENST00000471037 IGLV2-18A0A075B6J9 118 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 TRGV11A0A075B6L2 103 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 FAM231BA6NCW3 169 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 RPL19P84098 196 aaKnown RBP6.41□□□□□ -1.38
SF3A1-206ENST00000471037 MUC21Q5SSG8 566 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 DNLZQ5SXM8 178 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 ATRAIDQ6UW56 229 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 Q6ZQT7 251 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 C1orf158Q8N1D5 194 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 TSKUQ8WUA8 353 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 IMMP2LQ96T52 175 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 GFRA4Q9GZZ7 299 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 IL36BQ9NZH7 164 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 HSPG2P98160 4391 aa6.41□□□□□ -1.38
SF3A1-206ENST00000471037 TMSB15BA0A087X1C1 80 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 A0A1W2PPQ1 181 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 CBY3A6NI87 242 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 TYMSP04818 313 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 ASIPP42127 132 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 EMP1P54849 157 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 FAM222AQ5U5X8 452 aa6.4□□□□□ -1.38
SF3A1-206ENST00000471037 IGHV3OR16-12A0A075B7B8 117 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 SMIM27A0A1W2PRY6 76 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 CDK2AP2O75956 126 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 IGLC6P0CF74 106 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 S100PP25815 95 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 S100A4P26447 101 aaKnown RBP6.39□□□□□ -1.39
SF3A1-206ENST00000471037 FOXA3P55318 350 aaPredicted RBP6.39□□□□□ -1.39
SF3A1-206ENST00000471037 FAM3BP58499 235 aaPredicted RBP6.39□□□□□ -1.39
SF3A1-206ENST00000471037 ZNF415Q09FC8 603 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 C1orf134Q5TEV5 83 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 KCNIP4Q6PIL6 250 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 FER1L6-AS1Q8NA97 138 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 TMEM263Q8WUH6 116 aaKnown RBP6.39□□□□□ -1.39
SF3A1-206ENST00000471037 SMCO4Q9NRQ5 59 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 NAT8BQ9UHF3 227 aa6.39□□□□□ -1.39
SF3A1-206ENST00000471037 TRAV9-1A0A075B6T8 112 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 IGHV3-16A0A0C4DH30 117 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 GRIFINA4D1Z8 144 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 HIGD1CA8MV81 97 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 F2Z2F3 143 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 GNRH2O43555 120 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 OR5AL1P0C617 328 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 GZMBP10144 247 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 HTN1P15515 57 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 CTRLP40313 264 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 RRN3P1Q2M238 152 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 TMEM88Q6PEY1 159 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 ZNF493Q6ZR52 646 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 C15orf53Q8NAA6 179 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 RNASE8Q8TDE3 154 aaKnown RBP6.38□□□□□ -1.39
SF3A1-206ENST00000471037 GTSF1Q8WW33 167 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 C16orf74Q96GX8 76 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 BTF3L4Q96K17 158 aa6.38□□□□□ -1.39
SF3A1-206ENST00000471037 SSBP4Q9BWG4 385 aaPredicted RBP6.38□□□□□ -1.39
SF3A1-206ENST00000471037 TP53TG3Q9ULZ0 132 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms