RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TRAV8-6A0A0B4J262 113 aa11.15□□□□□ -0.62
CCDC28B-204ENST00000469003 RNF222A6NCQ9 220 aa11.15□□□□□ -0.62
CCDC28B-204ENST00000469003 RPL7L1Q6DKI1 246 aaKnown RBP11.15□□□□□ -0.62
CCDC28B-204ENST00000469003 CTXND1A0A1B0GTU2 59 aa11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 IBA57-AS1B1ANH7 110 aa11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 MGST1P10620 155 aaKnown RBP11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 XGP55808 180 aa11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 KRTAP10-1P60331 282 aa11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 OR10J3Q5JRS4 329 aa11.14□□□□□ -0.63
CCDC28B-204ENST00000469003 FXYD6-FXYD2A0A087WZ82 144 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 TRAV34A0A0B4J273 112 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 EPM2AB3EWF7 344 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 ZNF726P1Q15940 193 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 LELP1Q5T871 98 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 LINC00479Q96M42 142 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 ARL2-SNX15V9GYD0 113 aa11.13□□□□□ -0.63
CCDC28B-204ENST00000469003 IGKV3D-20A0A0C4DH25 116 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 PSCAO43653 123 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 IFNA7P01567 189 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 PIK3CD-AS1Q5SR53 167 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 ATP6V0E2Q8NHE4 81 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 GTSF1LQ9H1H1 148 aa11.12□□□□□ -0.63
CCDC28B-204ENST00000469003 LRCOL1A6NCL2 159 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 FABP5P3A8MUU1 101 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 A8MWV9 139 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 GCSHP23434 173 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 S100A4P26447 101 aaKnown RBP11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 UBE2G2P60604 165 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 ZFP2Q6ZN57 461 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 NKX6-2Q9C056 277 aaPredicted RBP11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 PARLQ9H300 379 aa11.11□□□□□ -0.63
CCDC28B-204ENST00000469003 PEX7O00628 323 aa11.1□□□□□ -0.63
CCDC28B-204ENST00000469003 ASIPP42127 132 aa11.1□□□□□ -0.63
CCDC28B-204ENST00000469003 Q86TA4 180 aa11.1□□□□□ -0.63
CCDC28B-204ENST00000469003 OR2T35Q8NGX2 323 aa11.1□□□□□ -0.63
CCDC28B-204ENST00000469003 HIST1H2BAQ96A08 127 aa11.1□□□□□ -0.63
CCDC28B-204ENST00000469003 FAM74A7A6NL05 159 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 IGHV3-30P01768 117 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 IGHV3-33P01772 117 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 IGHV3-30-3P0DP02 117 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 IGHV3-30-5P0DP03 117 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 LGALSLQ3ZCW2 172 aaPredicted RBP11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 AKR1C8PQ5T2L2 129 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 Q6ZSN1 163 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 NTN5Q8WTR8 489 aaPredicted RBP11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 Q9HAA7 133 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 IL36BQ9NZH7 164 aa11.09□□□□□ -0.63
CCDC28B-204ENST00000469003 LINC00694P0DN24 101 aa11.08□□□□□ -0.64
CCDC28B-204ENST00000469003 FGF8P55075 233 aaPredicted RBP11.08□□□□□ -0.64
CCDC28B-204ENST00000469003 IGLV5-52A0A0A0MRZ9 124 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 GAGE12JA6NER3 117 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 B4DEV8 164 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 G3V3Q6 166 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 INAFM2P0DMQ5 153 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 GAGE1Q13065 139 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 GAGE4Q13068 117 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 GAGE5Q13069 117 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 LAGE3Q14657 143 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 GAGE13Q4V321 117 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 DNLZQ5SXM8 178 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 UFSP1Q6NVU6 142 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 COX8CQ7Z4L0 72 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 ZFP30Q9Y2G7 519 aa11.07□□□□□ -0.64
CCDC28B-204ENST00000469003 MAP1LC3B2A6NCE7 125 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 KRBOX1C9JBD0 128 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 H3BVH4 76 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 CRIP1P50238 77 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 Q5VSD8 79 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 Q8N814 137 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 FRZBQ92765 325 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 ZC2HC1AQ96GY0 325 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 MAP1LC3BQ9GZQ8 125 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 JPT2Q9H910 190 aa11.06□□□□□ -0.64
CCDC28B-204ENST00000469003 DMRTA1Q5VZB9 504 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 SYT8Q8NBV8 401 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 FMC1Q96HJ9 113 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 TM2D2Q9BX73 214 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 SAMD10Q9BYL1 202 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 CYTL1Q9NRR1 136 aa11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 SRRM2Q9UQ35 2752 aaKnown RBP11.05□□□□□ -0.64
CCDC28B-204ENST00000469003 FAT1Q14517 4588 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 M0R036 132 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 RHODO00212 210 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 SH2D1AO60880 128 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 ARMS2P0C7Q2 107 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 UBE2G1P62253 170 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 FAM162BQ5T6X4 162 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 C14orf178Q8N769 122 aaPredicted RBP11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 OR11H4Q8NGC9 324 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 TCEAL7Q9BRU2 100 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 TMEM70Q9BUB7 260 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 Q9UF83 564 aa11.04□□□□□ -0.64
CCDC28B-204ENST00000469003 A0A087WWC5 75 aa11.03□□□□□ -0.64
CCDC28B-204ENST00000469003 TRBV6-1A0A0K0K1D8 114 aa11.03□□□□□ -0.64
CCDC28B-204ENST00000469003 ARPC5O15511 151 aa11.03□□□□□ -0.64
CCDC28B-204ENST00000469003 FHITP49789 147 aa11.03□□□□□ -0.64
CCDC28B-204ENST00000469003 Q8N3U1 123 aa11.03□□□□□ -0.64
CCDC28B-204ENST00000469003 TRAV8-3A0A0A6YYJ7 113 aa11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 GRIFINA4D1Z8 144 aa11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 ZNF674Q2M3X9 581 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms