RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 IGHV3-33P01772 117 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 IGHV3-30-3P0DP02 117 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 IGHV3-30-5P0DP03 117 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 ASIPP42127 132 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 TIRAPP58753 221 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 OR2T35Q8NGX2 323 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 ATP6V0E2Q8NHE4 81 aa11.86□□□□□ -0.51
COL7A1-206ENST00000466591 FABP5P3A8MUU1 101 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 A8MWV9 139 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 SYT8Q8NBV8 401 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 SUN5Q8TC36 379 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 C9orf85Q96MD7 179 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 NKX6-2Q9C056 277 aaPredicted RBP11.85□□□□□ -0.51
COL7A1-206ENST00000466591 C11orf21Q9P2W6 132 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 ARL2-SNX15V9GYD0 113 aa11.85□□□□□ -0.51
COL7A1-206ENST00000466591 IGLV5-52A0A0A0MRZ9 124 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 PGPEP1LA6NFU8 196 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 PEX7O00628 323 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 FGF8P55075 233 aaPredicted RBP11.84□□□□□ -0.51
COL7A1-206ENST00000466591 UBE2G1P62253 170 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 Q5BKY6 102 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 LINC01556Q5JQF7 62 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 FRZBQ92765 325 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 GTSF1LQ9H1H1 148 aa11.84□□□□□ -0.51
COL7A1-206ENST00000466591 ABCA13Q86UQ4 5058 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 B4DEV8 164 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 IGLV2-11P01706 119 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 GCSHP23434 173 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 LELP1Q5T871 98 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 DPPA3Q6W0C5 159 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 STOML3Q8TAV4 291 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 HIST1H2BAQ96A08 127 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 LINC00479Q96M42 142 aa11.83□□□□□ -0.52
COL7A1-206ENST00000466591 GAGE12JA6NER3 117 aa11.82□□□□□ -0.52
COL7A1-206ENST00000466591 RNASE3P12724 160 aaKnown RBP11.82□□□□□ -0.52
COL7A1-206ENST00000466591 GAGE1Q13065 139 aa11.82□□□□□ -0.52
COL7A1-206ENST00000466591 GAGE4Q13068 117 aa11.82□□□□□ -0.52
COL7A1-206ENST00000466591 GAGE5Q13069 117 aa11.82□□□□□ -0.52
COL7A1-206ENST00000466591 GAGE13Q4V321 117 aa11.82□□□□□ -0.52
COL7A1-206ENST00000466591 MAP1LC3B2A6NCE7 125 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 RNF222A6NCQ9 220 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 IBA57-AS1B1ANH7 110 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 H3BVH4 76 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 M0R036 132 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 ARPC5O15511 151 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 CST9LP1Q5W188 147 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 Q86TA4 180 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 PTH2Q96A98 100 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 TM2D2Q9BX73 214 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 MAP1LC3BQ9GZQ8 125 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 URGCP-MRPS24S4R325 110 aa11.81□□□□□ -0.52
COL7A1-206ENST00000466591 FAM74A4Q5TZK3 123 aa11.8□□□□□ -0.52
COL7A1-206ENST00000466591 ZFP2Q6ZN57 461 aa11.8□□□□□ -0.52
COL7A1-206ENST00000466591 OR11H4Q8NGC9 324 aa11.8□□□□□ -0.52
COL7A1-206ENST00000466591 PARLQ9H300 379 aa11.8□□□□□ -0.52
COL7A1-206ENST00000466591 PHLDA3Q9Y5J5 127 aa11.8□□□□□ -0.52
COL7A1-206ENST00000466591 IGKV3D-20A0A0C4DH25 116 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 FAM74A7A6NL05 159 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 KRTAP10-1P60331 282 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 ZNF726P1Q15940 193 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 RGS21Q2M5E4 152 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 FAM162BQ5T6X4 162 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 KCNIP4Q6PIL6 250 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 NTN5Q8WTR8 489 aaPredicted RBP11.79□□□□□ -0.52
COL7A1-206ENST00000466591 FMC1Q96HJ9 113 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 ZFP30Q9Y2G7 519 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 DNAH5Q8TE73 4624 aa11.79□□□□□ -0.52
COL7A1-206ENST00000466591 RHODO00212 210 aa11.78□□□□□ -0.52
COL7A1-206ENST00000466591 TPT1P13693 172 aaKnown RBP11.78□□□□□ -0.52
COL7A1-206ENST00000466591 TOR2AQ5JU69 321 aa11.78□□□□□ -0.52
COL7A1-206ENST00000466591 IL36BQ9NZH7 164 aa11.78□□□□□ -0.52
COL7A1-206ENST00000466591 APOBP04114 4563 aaKnown RBP11.77□□□□□ -0.52
COL7A1-206ENST00000466591 A0A087WWC5 75 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 TMSB15BA0A087X1C1 80 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 GRIFINA4D1Z8 144 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 SH2D1AO60880 128 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 AKR1C3P42330 323 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 PIK3CD-AS1Q5SR53 167 aa11.77□□□□□ -0.53
COL7A1-206ENST00000466591 TRAV8-3A0A0A6YYJ7 113 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 M0R381 172 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 ARMS2P0C7Q2 107 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 INAFM2P0DMQ5 153 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 LAGE3Q14657 143 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 Q5VSD8 79 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 Q8N814 137 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 ZC2HC1AQ96GY0 325 aa11.76□□□□□ -0.53
COL7A1-206ENST00000466591 FAM229AH3BQW9 127 aa11.75□□□□□ -0.53
COL7A1-206ENST00000466591 PFDN1O60925 122 aa11.75□□□□□ -0.53
COL7A1-206ENST00000466591 SEC11BP0C7V7 166 aa11.75□□□□□ -0.53
COL7A1-206ENST00000466591 TCEAL7Q9BRU2 100 aa11.75□□□□□ -0.53
COL7A1-206ENST00000466591 KRBOX1C9JBD0 128 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 XGP55808 180 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 DMRTA1Q5VZB9 504 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 Q6ZSN1 163 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 ZFP82Q8N141 532 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 RMI2Q96E14 147 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 JPT2Q9H910 190 aa11.74□□□□□ -0.53
COL7A1-206ENST00000466591 A0A087WWL8 130 aa11.73□□□□□ -0.53
COL7A1-206ENST00000466591 A0A1B0GV50 99 aa11.73□□□□□ -0.53
COL7A1-206ENST00000466591 SMR3BP02814 79 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms