RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 IGHV1OR15-1A0A075B7D0 117 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 TPSG1Q9NRR2 321 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 TRAV13-2A0A0B4J235 113 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 SAA4P35542 130 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 RPL36AP83881 106 aaKnown RBP5.47□□□□□ -1.53
SYNE1-216ENST00000461872 DYNAPQ8N1N2 210 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 RPL36ALQ969Q0 106 aaKnown RBP5.47□□□□□ -1.53
SYNE1-216ENST00000461872 PRSS29PA6NIE9 313 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 ELANEP08246 267 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 PCSK5Q92824 1860 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 TIMM17BO60830 172 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 NSUN5P1Q3KNT7 163 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 DUX5Q96PT3 197 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 C2CD3Q4AC94 2353 aa5.47□□□□□ -1.53
SYNE1-216ENST00000461872 LY6LH3BQJ8 138 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 ATP6V0E1O15342 81 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 ATP5J2P56134 94 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 TMEM95Q3KNT9 176 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 MORN5Q5VZ52 161 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 CCL19Q99731 98 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 MYO18BQ8IUG5 2567 aa5.46□□□□□ -1.53
SYNE1-216ENST00000461872 CRPP02741 224 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 Q6Q795 121 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 DUX3Q96PT4 197 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 CGB1A6NKQ9 187 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 FCN3O75636 299 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 FXYD2P54710 66 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 LINC01560Q8TB33 94 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV7-81A0A0B4J1V7 117 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 PIEZO2Q9H5I5 2752 aa5.46□□□□□ -1.54
SYNE1-216ENST00000461872 K7ENP7 123 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 ANKRD29Q8N6D5 301 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 NEXN-AS1Q8NBZ9 246 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 MDFICQ9P1T7 246 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 H0YGX0 51 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 TRBV6-5A0A0K0K1A5 114 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 SMKR1H3BMG3 65 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 FGF6P10767 208 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 SLC25A29Q8N8R3 303 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 CLUHP3Q96NS8 147 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 ERCC8Q13216 396 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 SEM1Q6ZVN7 128 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 C9JAW5 83 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 GPHB5Q86YW7 130 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 FANCD2OSQ96PS1 177 aa5.45□□□□□ -1.54
SYNE1-216ENST00000461872 NDUFA11Q86Y39 141 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 EDA2RQ9HAV5 297 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 NDUFA12Q9UI09 145 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 NAV2Q8IVL1 2488 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 C11orf44Q8N8P7 122 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 TNFRSF13BO14836 293 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-216ENST00000461872 PYGO1Q9Y3Y4 419 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 CDK2AP2O75956 126 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 ZNF876PQ49A33 203 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 PHLDA1Q8WV24 401 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-216ENST00000461872 HIVEP3Q5T1R4 2406 aa5.44□□□□□ -1.54
SYNE1-216ENST00000461872 ZFP2Q6ZN57 461 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 LINC00173Q6ZV60 143 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 HIVEP2P31629 2446 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 AJUBAQ96IF1 538 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 PTPRBP23467 1997 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 DUX4L9Q6RFH8 374 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-216ENST00000461872 SMIM20Q8N5G0 67 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 CENPVL3A0A0U1RRI6 287 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 IGF1P05019 195 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 CFHR4Q92496 578 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 ATP5EP2Q5VTU8 51 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 Q8N6K4 173 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 BAALCQ8WXS3 180 aa5.43□□□□□ -1.54
SYNE1-216ENST00000461872 MRPL36Q9P0J6 103 aaKnown RBP5.43□□□□□ -1.54
SYNE1-216ENST00000461872 TRBV10-2A0A0K0K1G8 114 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 MSRB2Q9Y3D2 182 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 LINC00322Q6ZN03 302 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-216ENST00000461872 TRAV26-1A0A087WT03 109 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 TRBV27A0A0K0K1C4 114 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 KLK9Q2XQG4 91 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 KLK9Q9UKQ9 250 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 NFE4Q86UQ8 179 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 H7C423 109 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 PRSS33Q8NF86 280 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 PSMG3-AS1Q96PY0 264 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 FRMD6-AS1P0C7T7 363 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 IGF2RP11717 2491 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 IGHG2P01859 326 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 PDE6GP18545 87 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 CFAP161Q6P656 301 aa5.42□□□□□ -1.54
SYNE1-216ENST00000461872 TRBV10-1A0A0K0K1A3 114 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 MSMPQ1L6U9 139 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 ANXA2RQ3ZCQ2 193 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 LINC01620Q4KN68 170 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 ATOX1O00244 68 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 CRIP2P52943 208 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-216ENST00000461872 DIAPH2-AS1Q14236 149 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 TRAV25A0A0B4J276 109 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 IGHV3-35A0A0C4DH35 117 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 E7EUB6 86 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 MRPS12O15235 138 aaKnown RBP5.41□□□□□ -1.54
SYNE1-216ENST00000461872 PPIFP30405 207 aaKnown RBP5.41□□□□□ -1.54
SYNE1-216ENST00000461872 Q6ZUT4 128 aa5.41□□□□□ -1.54
SYNE1-216ENST00000461872 MUC7Q8TAX7 377 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms