RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF56Q15929 161 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 SPANXN4Q5MJ08 99 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 C12orf73Q69YU5 71 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 RPS27LQ71UM5 84 aaKnown RBP3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 C6orf201Q7Z4U5 140 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 C5orf38Q86SI9 138 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 CD177Q8N6Q3 437 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 GNG13Q9P2W3 67 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 EPDR1Q9UM22 224 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 LINC00588Q9Y4M8 146 aa3.59□□□□□ -1.84
CCDC88A-209ENST00000456975 FER1L5A0AVI2 2057 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 ANKRD12Q6UB98 2062 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 CELSR2Q9HCU4 2923 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 SPTBP11277 2137 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 LOC100131303A0A0U1RQF7 123 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 C16orf97H3BN30 126 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 PCBD1P61457 104 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 LCA10Q71F78 164 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 PRNTQ86SH4 94 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF645Q8N7E2 425 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 C11orf72Q8NBR9 251 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 MDC1Q14676 2089 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 NINQ8N4C6 2090 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 OTOGQ6ZRI0 2925 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 CENPEQ02224 2701 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 SPENQ96T58 3664 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 A0A087WZ39 114 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 IGHV1-24A0A0C4DH33 117 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 FSTL3O95633 263 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 LINC00313P59037 77 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 ATP1A1-AS1Q5TC04 95 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 Q6ZVQ6 151 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF584Q8IVC4 421 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 TMEM252Q8N6L7 170 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 MORN4Q8NDC4 146 aa3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 TAF15Q92804 592 aaKnown RBP eCLIP3.58□□□□□ -1.84
CCDC88A-209ENST00000456975 IGKV3D-11A0A0A0MRZ8 115 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 A0A1W2PQD3 144 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 DEFB134Q4QY38 66 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 TMEM155Q4W5P6 130 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 ZFP2Q6ZN57 461 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF329Q86UD4 541 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 C18orf12Q96KH6 178 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 LINC00474Q9P2X8 69 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 SLC25A15Q9Y619 301 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 SETD2Q9BYW2 2564 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 DIDO1Q9BTC0 2240 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 GTF3C1Q12789 2109 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 ADGRG4Q8IZF6 3080 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 NAV3Q8IVL0 2385 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 SCN2AQ99250 2005 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 SEC16AO15027 2179 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 CELSR1Q9NYQ6 3014 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 FBN3Q75N90 2809 aa3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 RP1L1Q8IWN7 2480 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-209ENST00000456975 TCRBV4S1A1TA0A5B7 111 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 CCKP06307 115 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 GCHFRP30047 84 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 HMGA2P52926 109 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 MP68P56378 58 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 IGLV3-21P80748 117 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 PSMG4Q5JS54 123 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 Q6P435 159 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 RNASE6Q93091 150 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 RNF185Q96GF1 192 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 CCL13Q99616 98 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 CSMD1Q96PZ7 3565 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 IGHV1-45A0A0A0MS14 117 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 FRMD6-AS1P0C7T7 363 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 PSMB2P49721 201 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 PRR3P79522 188 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 IGFL3Q6UXB1 125 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 TOMM6Q96B49 74 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 IMMP1LQ96LU5 166 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF747Q9BV97 191 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 POLEQ07864 2286 aa3.56□□□□□ -1.84
CCDC88A-209ENST00000456975 IGLV5-37A0A075B6J1 123 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 TMSB15BA0A087X1C1 80 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 C19orf71A6NCJ1 209 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 CEBPZOSA8MTT3 80 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 COX7A2LO14548 114 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 LEPROTL1O95214 131 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 RNASE2P10153 161 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 UBE2D3P61077 147 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 UBE2D2P62837 147 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 RPL30P62888 115 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 FHL2Q14192 279 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 LINC00643Q86TS7 51 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 TRGV9Q99603 122 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 TMEM243Q9BU79 118 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 KRTAP9-8Q9BYQ0 159 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 IL36BQ9NZH7 164 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 ZNF492Q9P255 531 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 IGHV3OR15-7A0A075B7D8 119 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 LOC389332A0A1B0GUA5 103 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 ATP6V0E1O15342 81 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 PROP1O75360 226 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 CDK2AP2O75956 126 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 HBDP02042 147 aa3.55□□□□□ -1.84
CCDC88A-209ENST00000456975 IL4P05112 153 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms