RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DYNLRB2Q8TF09 96 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 TSKUQ8WUA8 353 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 ERG28Q9UKR5 140 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 NOP16Q9Y3C1 178 aaKnown RBP0.26□□□□□ -2.37
USP40-209ENST00000452724 CCDC171Q6TFL3 1326 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 KIAA1549LQ6ZVL6 1849 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 TANC2Q9HCD6 1990 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 NAV2Q8IVL1 2488 aa0.26□□□□□ -2.37
USP40-209ENST00000452724 TRAV17A0A0B4J275 112 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 MPC1LP0DKB6 136 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 PYYP10082 97 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 TMEM141Q96I45 108 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 DSCR8Q96T75 97 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 BATF3Q9NR55 127 aa0.25□□□□□ -2.37
USP40-209ENST00000452724 TRBV20-1A0A075B6N2 111 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 SLC25A6P12236 298 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 NCS1P62166 190 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 CLLU1Q5K131 121 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 OR2T2Q6IF00 324 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 SNX29P2Q8IUI4 249 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 SAR1AQ9NR31 198 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 FER1L6Q2WGJ9 1857 aa0.24□□□□□ -2.37
USP40-209ENST00000452724 CDK12Q9NYV4 1490 aaPredicted RBP0.23□□□□□ -2.37
USP40-209ENST00000452724 J3QLW9 94 aa0.23□□□□□ -2.37
USP40-209ENST00000452724 ELOF1P60002 83 aaKnown RBP0.23□□□□□ -2.37
USP40-209ENST00000452724 EMX2Q04743 252 aa0.23□□□□□ -2.37
USP40-209ENST00000452724 NINQ8N4C6 2090 aa0.23□□□□□ -2.37
USP40-209ENST00000452724 KIDINS220Q9ULH0 1771 aa0.22□□□□□ -2.37
USP40-209ENST00000452724 ZNF670-ZNF695F2Z2N8 137 aa0.22□□□□□ -2.37
USP40-209ENST00000452724 TSPAN19P0C672 248 aa0.22□□□□□ -2.37
USP40-209ENST00000452724 VMO1Q7Z5L0 202 aa0.22□□□□□ -2.37
USP40-209ENST00000452724 GSKIPQ9P0R6 139 aa0.22□□□□□ -2.37
USP40-209ENST00000452724 LSM2Q9Y333 95 aaKnown RBP0.22□□□□□ -2.37
USP40-209ENST00000452724 OVOS2A0A0J9YW53 1432 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 OVOS2Q6IE36 1432 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 TCRBV3S1A0A5B6 114 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 RBAKDNA6NC62 111 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 NCR2O95944 276 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 CKS1BP61024 79 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 HIST1H1AQ02539 215 aaPredicted RBP0.21□□□□□ -2.38
USP40-209ENST00000452724 SSBP1Q04837 148 aaKnown RBP0.21□□□□□ -2.38
USP40-209ENST00000452724 ALX1Q15699 326 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 IFI27L1Q96BM0 104 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 DISP2A7MBM2 1401 aa0.21□□□□□ -2.38
USP40-209ENST00000452724 ANK1P16157 1881 aa0.2□□□□□ -2.38
USP40-209ENST00000452724 J3QR89 54 aa0.2□□□□□ -2.38
USP40-209ENST00000452724 IGLC6P0CF74 106 aa0.2□□□□□ -2.38
USP40-209ENST00000452724 PROK2Q9HC23 129 aa0.2□□□□□ -2.38
USP40-209ENST00000452724 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.2□□□□□ -2.38
USP40-209ENST00000452724 LRP5O75197 1615 aa0.2□□□□□ -2.38
USP40-209ENST00000452724 F2Z2F3 143 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 ARPC5O15511 151 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 CCL3L1P16619 93 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 CYP2G1PQ6ZSU1 146 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 VSTM2AQ8TAG5 236 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 LZICQ8WZA0 190 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 PRR15LQ9BU68 103 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 BPESC1Q9GZL8 116 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 BDP1A6H8Y1 2624 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 TNCP24821 2201 aa0.19□□□□□ -2.38
USP40-209ENST00000452724 M0R2Z0 102 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 TFF1P04155 84 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 LINC01545Q5VT33 79 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 NDUFA12Q9UI09 145 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 LOC285556D6RIA3 1793 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 ARHGEF10O15013 1369 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 MEGF8Q7Z7M0 2845 aa0.18□□□□□ -2.38
USP40-209ENST00000452724 FAM236AA0A1B0GUQ0 79 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 FAM236BA0A1B0GV22 79 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 LINC00694P0DN24 101 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 KDM5CP41229 1560 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 SPCS2Q15005 226 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 FAM74A4Q5TZK3 123 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 SPANXN1Q5VSR9 72 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 CTAGE3PQ8IX95 158 aa0.17□□□□□ -2.38
USP40-209ENST00000452724 CDK13Q14004 1512 aaKnown RBP0.17□□□□□ -2.38
USP40-209ENST00000452724 FAT4Q6V0I7 4981 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 ABCA4P78363 2273 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 ESPL1Q14674 2120 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 XIRP1Q702N8 1843 aaKnown RBP0.16□□□□□ -2.38
USP40-209ENST00000452724 A0A087WTM6 91 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 GVQW2A0A096LPI5 108 aaPredicted RBP0.16□□□□□ -2.38
USP40-209ENST00000452724 TRAV12-3A0A0B4J271 114 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 LOC105371267A0A1B0GV96 52 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 COX4I1P13073 169 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 NPC2P61916 151 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 SCIMPQ6UWF3 145 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 C4orf33Q8N1A6 199 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 SMIM11BQ8TCY0 68 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 COX7B2Q8TF08 81 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 MAFIPQ8WZ33 124 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 SMIM3Q9BZL3 60 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 SYNE2Q8WXH0 6885 aaKnown RBP0.16□□□□□ -2.38
USP40-209ENST00000452724 DLEC1Q9Y238 1755 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 TRPM7Q96QT4 1865 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 PTPRMP28827 1452 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 ERCC6Q03468 1493 aa0.16□□□□□ -2.38
USP40-209ENST00000452724 ATG2AQ2TAZ0 1938 aa0.15□□□□□ -2.39
USP40-209ENST00000452724 SYNE1Q8NF91 8797 aaKnown RBP0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms