RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 C9orf85Q96MD7 179 aa10.63□□□□□ -0.71
LIMS1-210ENST00000449684 LY96Q9Y6Y9 160 aa10.63□□□□□ -0.71
LIMS1-210ENST00000449684 LOC100131303A0A0U1RQF7 123 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 PGPEP1LA6NFU8 196 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 PAGE4O60829 102 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 RNASE3P12724 160 aaKnown RBP10.62□□□□□ -0.71
LIMS1-210ENST00000449684 TPT1P13693 172 aaKnown RBP10.62□□□□□ -0.71
LIMS1-210ENST00000449684 EVI2AP22794 236 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 LINC00315P59091 139 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 RHOHQ15669 191 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 ZNF506Q5JVG8 444 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 DPPA3Q6W0C5 159 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 HERC2O95714 4834 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 KIAA1109Q2LD37 5005 aa10.62□□□□□ -0.71
LIMS1-210ENST00000449684 IGKV3D-20A0A0C4DH25 116 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 M0R036 132 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 H2AFB1P0C5Y9 115 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 FAM162BQ5T6X4 162 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 TMUB2Q71RG4 321 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 SLC25A29Q8N8R3 303 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 SYT8Q8NBV8 401 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 MBD3L1Q8WWY6 194 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 PTH2Q96A98 100 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 ZC2HC1AQ96GY0 325 aa10.61□□□□□ -0.71
LIMS1-210ENST00000449684 TRBV6-4A0A1B0GX49 114 aa10.6□□□□□ -0.71
LIMS1-210ENST00000449684 A8MWV9 139 aa10.6□□□□□ -0.71
LIMS1-210ENST00000449684 SH2D1AO60880 128 aa10.6□□□□□ -0.71
LIMS1-210ENST00000449684 NFE4Q86UQ8 179 aa10.6□□□□□ -0.71
LIMS1-210ENST00000449684 H3BVH4 76 aa10.59□□□□□ -0.71
LIMS1-210ENST00000449684 EREGO14944 169 aa10.59□□□□□ -0.71
LIMS1-210ENST00000449684 S100A9P06702 114 aaKnown RBP10.59□□□□□ -0.71
LIMS1-210ENST00000449684 MGST1P10620 155 aaKnown RBP10.59□□□□□ -0.71
LIMS1-210ENST00000449684 SPATA12Q7Z6I5 190 aa10.59□□□□□ -0.71
LIMS1-210ENST00000449684 WFDC10BQ8IUB3 73 aa10.59□□□□□ -0.71
LIMS1-210ENST00000449684 DNAH11Q96DT5 4516 aa10.59□□□□□ -0.71
LIMS1-210ENST00000449684 TMSB15BA0A087X1C1 80 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 TRAV8-6A0A0B4J262 113 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 GRIFINA4D1Z8 144 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 KRBOX1C9JBD0 128 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 K7EP13 123 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 ARMS2P0C7Q2 107 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 EIF5AL1Q6IS14 154 aaKnown RBP10.58□□□□□ -0.72
LIMS1-210ENST00000449684 IL36BQ9NZH7 164 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 PHLDA3Q9Y5J5 127 aa10.58□□□□□ -0.72
LIMS1-210ENST00000449684 TRBV6-1A0A0K0K1D8 114 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 TEX46H3BTG2 121 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 LTAP01374 205 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 CRIP1P50238 77 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 OR10J3Q5JRS4 329 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 PIK3CD-AS1Q5SR53 167 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 PARLQ9H300 379 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 BOLA1Q9Y3E2 137 aa10.57□□□□□ -0.72
LIMS1-210ENST00000449684 DYNC1H1Q14204 4646 aaKnown RBP10.57□□□□□ -0.72
LIMS1-210ENST00000449684 SCO2A0A1W2PP80 73 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 CRYGDP07320 174 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 DNAH10OSP0CZ25 163 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 TIRAPP58753 221 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 ZFP2Q6ZN57 461 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 C10orf126Q8N4M7 172 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 ATP6V0E2Q8NHE4 81 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 MSRB1Q9NZV6 116 aa10.56□□□□□ -0.72
LIMS1-210ENST00000449684 IGHV3-38A0A0C4DH36 116 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 RAB5CP51148 216 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 ERVFC1-1P60608 527 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 ZNF674Q2M3X9 581 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 FAM74A4Q5TZK3 123 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 DMRTA1Q5VZB9 504 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 BAGE2Q86Y30 109 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 GNG13Q9P2W3 67 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 TNFRSF18Q9Y5U5 241 aa10.55□□□□□ -0.72
LIMS1-210ENST00000449684 GAGE12JA6NER3 117 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 M0R381 172 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 RHODO00212 210 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 GAGE1Q13065 139 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 GAGE4Q13068 117 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 GAGE5Q13069 117 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 LINC01559Q495D7 138 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 GAGE13Q4V321 117 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 DNLZQ5SXM8 178 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 GTSF1LQ9H1H1 148 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 JPT2Q9H910 190 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 MANBALQ9NQG1 85 aa10.54□□□□□ -0.72
LIMS1-210ENST00000449684 LELP1Q5T871 98 aa10.53□□□□□ -0.72
LIMS1-210ENST00000449684 Q6ZRN7 208 aaPredicted RBP10.53□□□□□ -0.72
LIMS1-210ENST00000449684 ZFP82Q8N141 532 aa10.53□□□□□ -0.72
LIMS1-210ENST00000449684 PRR27Q6MZM9 219 aa10.52□□□□□ -0.73
LIMS1-210ENST00000449684 Q6ZSN1 163 aa10.52□□□□□ -0.73
LIMS1-210ENST00000449684 TCTE3Q8IZS6 198 aa10.52□□□□□ -0.73
LIMS1-210ENST00000449684 A0A087WWL8 130 aa10.51□□□□□ -0.73
LIMS1-210ENST00000449684 PSCAO43653 123 aa10.51□□□□□ -0.73
LIMS1-210ENST00000449684 LINC01556Q5JQF7 62 aa10.51□□□□□ -0.73
LIMS1-210ENST00000449684 SFRP2Q96HF1 295 aa10.51□□□□□ -0.73
LIMS1-210ENST00000449684 SAMD10Q9BYL1 202 aa10.51□□□□□ -0.73
LIMS1-210ENST00000449684 IFNA1P01562 189 aa10.5□□□□□ -0.73
LIMS1-210ENST00000449684 IGHV3-30P01768 117 aa10.5□□□□□ -0.73
LIMS1-210ENST00000449684 IGHV3-33P01772 117 aa10.5□□□□□ -0.73
LIMS1-210ENST00000449684 IGHV3-30-3P0DP02 117 aa10.5□□□□□ -0.73
LIMS1-210ENST00000449684 IGHV3-30-5P0DP03 117 aa10.5□□□□□ -0.73
LIMS1-210ENST00000449684 RPL35P42766 123 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms