RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 A0A1W2PPQ1 181 aa11.26□□□□□ -0.61
USP40-206ENST00000443711 FER1L6-AS1Q8NA97 138 aa11.26□□□□□ -0.61
USP40-206ENST00000443711 PTH2Q96A98 100 aa11.26□□□□□ -0.61
USP40-206ENST00000443711 PHLDA3Q9Y5J5 127 aa11.26□□□□□ -0.61
USP40-206ENST00000443711 SNAI2O43623 268 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 OR5AL1P0C617 328 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 IGLC6P0CF74 106 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 DEFB130BP0DP73 79 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 DEFB130AP0DP74 79 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 DAD1P61803 113 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 Q6ZTI0 123 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 TSKUQ8WUA8 353 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 SSBP4Q9BWG4 385 aaPredicted RBP11.25□□□□□ -0.61
USP40-206ENST00000443711 SCRT2Q9NQ03 307 aa11.25□□□□□ -0.61
USP40-206ENST00000443711 MRPL16Q9NX20 251 aaKnown RBP11.25□□□□□ -0.61
USP40-206ENST00000443711 GAGE12BA1L429 117 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 FAM231BA6NCW3 169 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 F2Z2F3 143 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 GAGE7O76087 117 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 APOC3P02656 99 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 GAGE12FP0CL80 117 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 GAGE12GP0CL81 117 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 GAGE12IP0CL82 117 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 RNF212Q495C1 297 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 ZNF876PQ49A33 203 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 LINC00612Q8N6U2 182 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 SYT8Q8NBV8 401 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 RASL10AQ92737 203 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 ANAPC16Q96DE5 110 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 TPPP3Q9BW30 176 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 GFRA4Q9GZZ7 299 aa11.24□□□□□ -0.61
USP40-206ENST00000443711 C12orf74Q32Q52 190 aa11.23□□□□□ -0.61
USP40-206ENST00000443711 PIK3CD-AS1Q5SR53 167 aa11.23□□□□□ -0.61
USP40-206ENST00000443711 LYZL1Q6UWQ5 148 aa11.23□□□□□ -0.61
USP40-206ENST00000443711 ZFP82Q8N141 532 aa11.23□□□□□ -0.61
USP40-206ENST00000443711 NDUFAF3Q9BU61 184 aa11.23□□□□□ -0.61
USP40-206ENST00000443711 TRGV2A0A075B6R0 118 aa11.22□□□□□ -0.61
USP40-206ENST00000443711 FOXA3P55318 350 aaPredicted RBP11.22□□□□□ -0.61
USP40-206ENST00000443711 NANOS2P60321 138 aaKnown RBP11.22□□□□□ -0.61
USP40-206ENST00000443711 SPANXN1Q5VSR9 72 aa11.22□□□□□ -0.61
USP40-206ENST00000443711 WDR73Q6P4I2 378 aa11.22□□□□□ -0.61
USP40-206ENST00000443711 CLRN3Q8NCR9 226 aa11.22□□□□□ -0.61
USP40-206ENST00000443711 GTSF1Q8WW33 167 aa11.22□□□□□ -0.61
USP40-206ENST00000443711 M0R381 172 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 CACNG7P62955 275 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 DMRTA1Q5VZB9 504 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 SVBPQ8N300 66 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 OR10AG1Q8NH19 301 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 PGLYRP4Q96LB8 373 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 C18orf15Q96N68 181 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 CTDSP1Q9GZU7 261 aa11.21□□□□□ -0.61
USP40-206ENST00000443711 MUC21A0A0G2JKD1 596 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 MUC21A0A140T8X8 626 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 SMIM27A0A1W2PRY6 76 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 C7orf77A4D0Y5 90 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 SNAPINO95295 136 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 CTRLP40313 264 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 RHEBQ15382 184 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 BORCS7Q96B45 105 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 NAT8BQ9UHF3 227 aa11.2□□□□□ -0.62
USP40-206ENST00000443711 HIGD1CA8MV81 97 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 NXPH4O95158 308 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 ATP5G1P05496 136 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 SSTP61278 116 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 Q6ZTC4 211 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 WWC2-AS2Q96NR7 200 aa11.19□□□□□ -0.62
USP40-206ENST00000443711 IGHV4-4A0A075B6R2 117 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 A0A087WWC5 75 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 TRAV4A0A0B4J268 109 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 A8MWV9 139 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 RS1O15537 224 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 OR4C5Q8NGB2 326 aa11.18□□□□□ -0.62
USP40-206ENST00000443711 TRAV10A0A0B4J240 114 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 CIDEAO60543 219 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 NTF3P20783 257 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 CFAP126Q5VTH2 177 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 NUP35Q8NFH5 326 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 CNFNQ9BYD5 112 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 RPS10P5Q9NQ39 176 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 TMEM242Q9NWH2 141 aa11.17□□□□□ -0.62
USP40-206ENST00000443711 NACAE9PAV3 2078 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 A0A1B0GUT8 65 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 HTN3P15516 51 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 TWIST1Q15672 202 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 POM121L12Q8N7R1 296 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 IMMP2LQ96T52 175 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 MSRB1Q9NZV6 116 aa11.16□□□□□ -0.62
USP40-206ENST00000443711 DEFB131BA0A096LNP1 70 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 IGHV3-53P01767 116 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 TRGC1P0CF51 173 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 RIGQ13278 110 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 PHLDA1Q8WV24 401 aaPredicted RBP11.15□□□□□ -0.62
USP40-206ENST00000443711 ZNF479Q96JC4 524 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 JPT2Q9H910 190 aa11.15□□□□□ -0.62
USP40-206ENST00000443711 F5H768 121 aa11.14□□□□□ -0.63
USP40-206ENST00000443711 FAM3BP58499 235 aaPredicted RBP11.14□□□□□ -0.63
USP40-206ENST00000443711 KCNIP4Q6PIL6 250 aa11.14□□□□□ -0.63
USP40-206ENST00000443711 ZFP2Q6ZN57 461 aa11.14□□□□□ -0.63
USP40-206ENST00000443711 AP1S3Q96PC3 154 aa11.14□□□□□ -0.63
USP40-206ENST00000443711 TRGV4A0A0C4DH28 118 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms