RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CTSGP08311 255 aa13.37□□□□□ -0.27
PTPRF-209ENST00000438120 C9orf153Q5TBE3 101 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 ZNF493Q6ZR52 646 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 hADV29S1A0JD25 119 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 NPSP0C0P6 89 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 ZFP36P26651 326 aaKnown RBP13.36□□□□□ -0.27
PTPRF-209ENST00000438120 DEFB1P60022 68 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 A0A1W2PNU3 283 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-209ENST00000438120 SRSF2Q01130 221 aaKnown RBP13.36□□□□□ -0.27
PTPRF-209ENST00000438120 PCP2Q8IVA1 136 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 PLCE1Q9P212 2302 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 IGLV11-55A0A075B6I3 123 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 C9orf66Q5T8R8 295 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 PPDPFLQ8WWR9 84 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 TANC1Q9C0D5 1861 aa13.36□□□□□ -0.27
PTPRF-209ENST00000438120 RBAKDNA6NC62 111 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 DEFB4AO15263 64 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 C10orf105Q8TEF2 133 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 IGKV1-17P01599 117 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 IGHG4P01861 327 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 A0A1W2PPM0 123 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 K7EP34 96 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 PATE2Q6UY27 113 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 ZNF747Q9BV97 191 aa13.35□□□□□ -0.27
PTPRF-209ENST00000438120 Q8N9W7 124 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 FAM208BQ5VWN6 2430 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 BUB3O43684 328 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 SEM1Q6ZVN7 128 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 C1orf43Q9BWL3 253 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 EML6Q6ZMW3 1958 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 PRAC2D3DTV9 90 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 C5orf56Q8N8D9 126 aa13.34□□□□□ -0.27
PTPRF-209ENST00000438120 K7EP13 123 aa13.33□□□□□ -0.28
PTPRF-209ENST00000438120 C12orf74Q32Q52 190 aa13.33□□□□□ -0.28
PTPRF-209ENST00000438120 CITED2Q99967 270 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-209ENST00000438120 TRAV4A0A0B4J268 109 aa13.33□□□□□ -0.28
PTPRF-209ENST00000438120 KRTAP27-1Q3LI81 207 aa13.33□□□□□ -0.28
PTPRF-209ENST00000438120 Q6ZVH6 145 aa13.33□□□□□ -0.28
PTPRF-209ENST00000438120 F8W1H4 67 aa13.32□□□□□ -0.28
PTPRF-209ENST00000438120 SLC25A29Q8N8R3 303 aa13.32□□□□□ -0.28
PTPRF-209ENST00000438120 NDUFS5O43920 106 aa13.32□□□□□ -0.28
PTPRF-209ENST00000438120 K7EQD1 137 aa13.32□□□□□ -0.28
PTPRF-209ENST00000438120 ATP6V0E2Q8NHE4 81 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 C16orf74Q96GX8 76 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 BDP1A6H8Y1 2624 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 K7EMI3 77 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 CDPF1Q6NVV7 123 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 C16orf54Q6UWD8 224 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 LINC00173Q6ZV60 143 aa13.31□□□□□ -0.28
PTPRF-209ENST00000438120 Q8N7P7 452 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 CAMK2N2Q96S95 79 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 PCNX2A6NKB5 2137 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 NTN5Q8WTR8 489 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-209ENST00000438120 LENEPQ9Y5L5 61 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 E7EUB6 86 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 UTF1Q5T230 341 aa13.3□□□□□ -0.28
PTPRF-209ENST00000438120 Q8N1Y9 231 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 SPART-AS1P0CW21 52 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 RNF138Q8WVD3 245 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 ICOSQ9Y6W8 199 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 ATP5G1P05496 136 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 KMT2EQ8IZD2 1858 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 A0A0J9YXV3 536 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 C15orf53Q8NAA6 179 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 DENND4CQ5VZ89 1909 aa13.29□□□□□ -0.28
PTPRF-209ENST00000438120 CFC1BP0CG36 223 aa13.28□□□□□ -0.28
PTPRF-209ENST00000438120 CFC1P0CG37 223 aa13.28□□□□□ -0.28
PTPRF-209ENST00000438120 C2orf70A6NJV1 201 aa13.28□□□□□ -0.28
PTPRF-209ENST00000438120 CCL25O15444 150 aa13.28□□□□□ -0.28
PTPRF-209ENST00000438120 RPL39P62891 51 aaKnown RBP13.28□□□□□ -0.28
PTPRF-209ENST00000438120 ZFP2Q6ZN57 461 aa13.28□□□□□ -0.28
PTPRF-209ENST00000438120 MRPL23Q16540 153 aaKnown RBP13.27□□□□□ -0.28
PTPRF-209ENST00000438120 DEFB135Q30KP9 77 aa13.27□□□□□ -0.28
PTPRF-209ENST00000438120 IGHV4-28A0A0C4DH34 117 aa13.27□□□□□ -0.28
PTPRF-209ENST00000438120 DAND5Q8N907 189 aa13.27□□□□□ -0.28
PTPRF-209ENST00000438120 F8W735 103 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-209ENST00000438120 PTPRQQ9UMZ3 2332 aa13.27□□□□□ -0.29
PTPRF-209ENST00000438120 TEX22C9J3V5 150 aa13.27□□□□□ -0.29
PTPRF-209ENST00000438120 NUPR1O60356 82 aa13.27□□□□□ -0.29
PTPRF-209ENST00000438120 CRYBA4P53673 196 aa13.27□□□□□ -0.29
PTPRF-209ENST00000438120 LYPD6BQ8NI32 183 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 BAALC-AS2P0C853 105 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 IGF2-ASQ6U949 168 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 MRPL36Q9P0J6 103 aaKnown RBP13.26□□□□□ -0.29
PTPRF-209ENST00000438120 TRBV12-3P01733 135 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 MSMPQ1L6U9 139 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 SPANXA1Q9NS26 97 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 PLA2G2EQ9NZK7 142 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 CCL18P55774 89 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 HIST2H2BCQ6DN03 193 aa13.26□□□□□ -0.29
PTPRF-209ENST00000438120 MUC6Q6W4X9 2439 aa13.25□□□□□ -0.29
PTPRF-209ENST00000438120 ETDCA0A1B0GVM5 59 aa13.25□□□□□ -0.29
PTPRF-209ENST00000438120 PROP1O75360 226 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 SIVA1O15304 175 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 ODF3L1Q8IXM7 274 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 NACAE9PAV3 2078 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 COX7A2LO14548 114 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 GTSF1Q8WW33 167 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 ORMDL1Q9P0S3 153 aa13.24□□□□□ -0.29
PTPRF-209ENST00000438120 WI2-2373I1.2A0A1W2PRP0 233 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms