RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 IGKV2-29A2NJV5 120 aaPredicted RBP9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 KLF2Q9Y5W3 355 aaPredicted RBP9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 U3KQE9 123 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 ICOSQ9Y6W8 199 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV4-30-2A0A087WSY4 118 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 SLX1AQ9BQ83 275 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 WISP1O95388 367 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 DYNAPQ8N1N2 210 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 COX11Q9Y6N1 276 aa9.51□□□□□ -0.89
CCDC88A-207ENST00000436346 FXYD5Q96DB9 178 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 FHL1Q13642 323 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 SIGLEC8Q9NYZ4 499 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 UBL5Q9BZL1 73 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 CCL18P55774 89 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 BUB3O43684 328 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 CRYGCP07315 174 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 VOPP1Q96AW1 172 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 NCOR1P1Q9H4R4 102 aa9.5□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV2-70P01814 119 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 C18orf32Q8TCD1 76 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 ZNF503Q96F45 646 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 K7EQD1 137 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 GNRH2O43555 120 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 FAM231BA6NCW3 169 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 NDUFS7O75251 213 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 RNF152Q8N8N0 203 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 OR11H6Q8NGC7 330 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 SMIM2Q9BVW6 85 aa9.49□□□□□ -0.89
CCDC88A-207ENST00000436346 FGF6P10767 208 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 HAMPP81172 84 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 PIFOQ8TCI5 191 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 PYGO2Q9BRQ0 406 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 TRBV20-1A0A075B6N2 111 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 K7ERJ3 54 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 SLC25A29Q8N8R3 303 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 F6UB75 175 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 KAAG1Q9UBP8 84 aa9.48□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV3-30P01768 117 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV3-33P01772 117 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV3-30-3P0DP02 117 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV3-30-5P0DP03 117 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 IGHV4-61A0A0C4DH41 118 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 BOD1L2Q8IYS8 172 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 IGLC7A0M8Q6 106 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 LTAP01374 205 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 SPART-AS1P0CW21 52 aa9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 GOLGB1Q14789 3259 aaKnown RBP9.47□□□□□ -0.89
CCDC88A-207ENST00000436346 DEFB135Q30KP9 77 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 SH2D6Q7Z4S9 175 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 IGLC1P0CG04 106 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 RBAKDNA6NC62 111 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 K7EM74 188 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 CEND1Q8N111 149 aa9.46□□□□□ -0.89
CCDC88A-207ENST00000436346 TINCRA0A1B0GVN0 87 aa9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 CFPP27918 469 aa9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 ETDCA0A1B0GVM5 59 aa9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 J3QQQ9 107 aa9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 C4orf3Q8WVX3 66 aa9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 WIPF2Q8TF74 440 aaPredicted RBP9.46□□□□□ -0.9
CCDC88A-207ENST00000436346 MRPL36Q9P0J6 103 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 SPRNQ5BIV9 151 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 DEFB4AO15263 64 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 DAZ2Q13117 558 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 DAZ4Q86SG3 579 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 DAZ3Q9NR90 486 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 CAMK2N2Q96S95 79 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 TIMM17AQ99595 171 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 Q9H8V8 135 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 V9GYV3 84 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 MRPL23Q16540 153 aaKnown RBP9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 CENPVL3A0A0U1RRI6 287 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 F8VRH5 84 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 CARD19Q96LW7 228 aa9.45□□□□□ -0.9
CCDC88A-207ENST00000436346 C20orf78Q9BR46 151 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 MRPL35Q9NZE8 188 aaKnown RBP9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 CLPSL1A2RUU4 121 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 C17orf77Q96MU5 243 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 ORMDL1Q9P0S3 153 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 C8orf31Q8N9H6 132 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 A8MWP6 167 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 ETV2O00321 342 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 C9orf153Q5TBE3 101 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 KLK5Q9Y337 293 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 RITA1Q96K30 269 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 C4orf48Q5BLP8 95 aa9.44□□□□□ -0.9
CCDC88A-207ENST00000436346 COX7A2LO14548 114 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 TRACP01848 142 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 Q0VG73 95 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 FUSP35637 526 aaKnown RBP eCLIP9.43□□□□□ -0.92e-9■□□□□ 9.5
CCDC88A-207ENST00000436346 C5orf56Q8N8D9 126 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 IGHV4-28A0A0C4DH34 117 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 UBE2AP49459 152 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 PRO1854Q9UHT4 67 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 ESM1Q9NQ30 184 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 EPG5Q9HCE0 2579 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 BVES-AS1Q5T3Y7 98 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 UBE2V1Q13404 147 aa9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 RPL39LQ96EH5 51 aaKnown RBP9.43□□□□□ -0.9
CCDC88A-207ENST00000436346 HLA-DMBP28068 263 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms