RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-206ENST00000430086 MUC4Q99102 2169 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 TRBV6-5A0A0K0K1A5 114 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 OOSP1A8MZH6 123 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 NUPR1O60356 82 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 CBLN1P23435 193 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 NDUFA11Q86Y39 141 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 C10orf105Q8TEF2 133 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 REG4Q9BYZ8 158 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 Q9H521 79 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 CDC42SE1Q9NRR8 79 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 LAMB2P55268 1798 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 KIDINS220Q9ULH0 1771 aa2.43□□□□□ -2.02
CCDC88A-206ENST00000430086 ADGRB3O60242 1522 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 QRICH2Q9H0J4 1663 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 ABCC10Q5T3U5 1492 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 IGLV3-32A0A0A0MS00 114 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 TMEM262E9PQX1 116 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 SLC25A6P12236 298 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 ATP5EP56381 51 aaPredicted RBP2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 LYPD5Q6UWN5 251 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 ATG5Q9H1Y0 275 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 NUMA1Q14980 2115 aa2.42□□□□□ -2.02
CCDC88A-206ENST00000430086 FBN1P35555 2871 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 TTC37Q6PGP7 1564 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 RB1CC1Q8TDY2 1594 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 TRBV10-1A0A0K0K1A3 114 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 J3QRE1 110 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 DCDP81605 110 aaKnown RBP2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 MPV17LQ2QL34 196 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 S100A7L2Q5SY68 101 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 DMAC1Q96GE9 116 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 TMEM14CQ9P0S9 112 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 MPDZO75970 2070 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 KIAA1549Q9HCM3 1950 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 BRWD1Q9NSI6 2320 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 NSD3Q9BZ95 1437 aa2.41□□□□□ -2.02
CCDC88A-206ENST00000430086 CECR2Q9BXF3 1484 aa2.4□□□□□ -2.02
CCDC88A-206ENST00000430086 A0A0J9YY99 117 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 UBE2L5PA0A1B0GUS4 154 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 JMJD7-PLA2G4BH0Y9G9 81 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 PPYP01298 95 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 IGKCP01834 107 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 LINC00032P0C843 101 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 PRB4P10163 310 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 RNASE3P12724 160 aaKnown RBP2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 UBE2G1P62253 170 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 UBE2L3P68036 154 aaKnown RBP2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 IQCJQ1A5X6 159 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 C9orf116Q5BN46 136 aaPredicted RBP2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 C5orf38Q86SI9 138 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 C4orf33Q8N1A6 199 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 Q8N8P6 123 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 TMEM106BQ9NUM4 274 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 SNURFQ9Y675 71 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 MICAL3Q7RTP6 2002 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 KIAA1549LQ6ZVL6 1849 aa2.4□□□□□ -2.03
CCDC88A-206ENST00000430086 SSSCA1O60232 199 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 DSCR8Q96T75 97 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 SNHG12Q9BXW3 62 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 MED9Q9NWA0 146 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 MRPL36Q9P0J6 103 aaKnown RBP2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 C22orf24Q9Y442 160 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 V9GYS6 101 aa2.39□□□□□ -2.03
CCDC88A-206ENST00000430086 AKAP11Q9UKA4 1901 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 RTTNQ86VV8 2226 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 COL4A5P29400 1685 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 TRGV2A0A075B6R0 118 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 TRBV10-3A0A0K0K1G6 114 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 H3BQ15 152 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 DNAL4O96015 105 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 RBM3P98179 157 aaKnown RBP2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 CSAG1Q6PB30 78 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 DPY30Q9C005 99 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 IFT140Q96RY7 1462 aa2.38□□□□□ -2.03
CCDC88A-206ENST00000430086 CITO14578 2027 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 CXorf51AA0A1B0GTR3 108 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 NUPR2A6NF83 97 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 MPC2O95563 127 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 IGHV3-30P01768 117 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 IGHV3-30-5P0DP03 117 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 UBA52P62987 128 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 INSL4Q14641 139 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 LRP5O75197 1615 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 LTBP2Q14767 1821 aa2.37□□□□□ -2.03
CCDC88A-206ENST00000430086 MRPS14O60783 128 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 COMMD6Q7Z4G1 85 aa2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 SBSPONQ8IVN8 264 aa2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 SPTSSBQ8NFR3 76 aa2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 WFDC10AQ9H1F0 79 aa2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 MRPL35Q9NZE8 188 aaKnown RBP2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 BCORL1Q5H9F3 1711 aa2.36□□□□□ -2.03
CCDC88A-206ENST00000430086 CPSF1Q10570 1443 aaKnown RBP2.35□□□□□ -2.03
CCDC88A-206ENST00000430086 INE1O15225 51 aa2.35□□□□□ -2.03
CCDC88A-206ENST00000430086 LINC00322Q6ZN03 302 aaPredicted RBP2.35□□□□□ -2.03
CCDC88A-206ENST00000430086 LIMD2Q9BT23 127 aa2.35□□□□□ -2.03
CCDC88A-206ENST00000430086 DPH3P1Q9H4G8 78 aa2.35□□□□□ -2.03
CCDC88A-206ENST00000430086 ALPK3Q96L96 1907 aa2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 TROQ12816 1431 aaPredicted RBP2.34□□□□□ -2.03
CCDC88A-206ENST00000430086 TRAV23DV6A0A075B6W5 121 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms