RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 ACYP1P07311 99 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 ARL14EPLP0DKL9 152 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 FOXA3P55318 350 aaPredicted RBP2.5□□□□□ -2.01
VPS54-204ENST00000416400 EDDM3BP56851 147 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 FGF12P61328 243 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 EDDM3AQ14507 147 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 RRN3P1Q2M238 152 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 TBC1D28Q2M2D7 210 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 C12orf74Q32Q52 190 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 MEIG1Q5JSS6 88 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 FAM27BQ5VT28 67 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 SPATA31B1PQ5VZV4 182 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 TEN1Q86WV5 123 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 SLC25A45Q8N413 288 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 OR11H6Q8NGC7 330 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 OR4C13Q8NGP0 309 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 CT55Q8WUE5 264 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 PRELID3AQ96N28 172 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 RTL8AQ9BWD3 113 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 FBXL15Q9H469 300 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 ZNF492Q9P255 531 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 COL14A1Q05707 1796 aaKnown RBP2.5□□□□□ -2.01
VPS54-204ENST00000416400 RALGAPA2Q2PPJ7 1873 aa2.5□□□□□ -2.01
VPS54-204ENST00000416400 BTAF1O14981 1849 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 VWA8A3KMH1 1905 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 TRBV20OR9-2A0A075B6H5 130 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1D-17A0A075B6S4 117 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 IGHV3-21A0A0B4J1V1 117 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 SMIM9A6NGZ8 99 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 LINC01549A6NIU2 74 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 SPINK4O60575 86 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1-17P01599 117 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 IGHG2P01859 326 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 HBDP02042 147 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 SCTP09683 121 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 C8orf88P0DMB2 117 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 FGF6P10767 208 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 ORM2P19652 201 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 EMP1P54849 157 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 CST6Q15828 149 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 C10orf128Q5T292 105 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 AMTNQ6UX39 209 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 Q8IYB0 196 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 VPREB3Q9UKI3 123 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 AMMECR1Q9Y4X0 333 aaPredicted RBP2.49□□□□□ -2.01
VPS54-204ENST00000416400 SHROOM3Q8TF72 1996 aa2.49□□□□□ -2.01
VPS54-204ENST00000416400 ANK1P16157 1881 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 PHIPQ8WWQ0 1821 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 IGHV1-45A0A0A0MS14 117 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 TRBV6-1A0A0K0K1D8 114 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 MYMXA0A1B0GTQ4 84 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 A0A1B0GUT8 65 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 TCRBV4S1A1TA0A5B7 111 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 HIGD1CA8MV81 97 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 C4orf51C9J302 202 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 C15orf65H3BRN8 121 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 UQCRQO14949 82 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 OR2H2O95918 312 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 NPYP01303 97 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 IGKV1-5P01602 117 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 ORM1P02763 201 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 MT-ATP8P03928 68 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 LGALS1P09382 135 aaKnown RBP2.48□□□□□ -2.01
VPS54-204ENST00000416400 CNTFRP26992 372 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 DLX6P56179 175 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 CFAP126Q5VTH2 177 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 RPS19BP1Q86WX3 136 aaKnown RBP2.48□□□□□ -2.01
VPS54-204ENST00000416400 SBSPONQ8IVN8 264 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 ZNRF2Q8NHG8 242 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 MYOZ3Q8TDC0 251 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 IFI27L1Q96BM0 104 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 IGF2BP2-AS1Q96M15 143 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 LINC01600Q96MT4 127 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 RNASE7Q9H1E1 156 aaKnown RBP2.48□□□□□ -2.01
VPS54-204ENST00000416400 NHP2Q9NX24 153 aaKnown RBP2.48□□□□□ -2.01
VPS54-204ENST00000416400 HILPDAQ9Y5L2 63 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 MPC1Q9Y5U8 109 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 PLXNA1Q9UIW2 1896 aa2.48□□□□□ -2.01
VPS54-204ENST00000416400 IGLV3-32A0A0A0MS00 114 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 SPAARA0A1B0GVQ0 90 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 C9JAW5 83 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 DPM2O94777 84 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 IGKCP01834 107 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 STATHP02808 62 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 TRGV3P03979 118 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 INAFM2P0DMQ5 153 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 PLNP26678 52 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 HSPE1P61604 102 aaKnown RBP2.47□□□□□ -2.01
VPS54-204ENST00000416400 TNFAIP6P98066 277 aaPredicted RBP2.47□□□□□ -2.01
VPS54-204ENST00000416400 TFF3Q07654 80 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 FXYD3Q14802 87 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 PIGYQ3MUY2 71 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 MIC13Q5XKP0 118 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 C10orf126Q8N4M7 172 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 COPS9Q8WXC6 57 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 MGST2Q99735 147 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 NABP2Q9BQ15 211 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 C20orf78Q9BR46 151 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 PRADC1Q9BSG0 188 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 SHANK2-AS3Q9BTD1 123 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms