RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TRAV26-2A0A0B4J265 109 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 VCYO14598 125 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 SMCPP49901 116 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 UCNP55089 124 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 TCTAP57738 103 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 LMO4P61968 165 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 ECSCRQ19T08 205 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 ETDBQ3ZM63 59 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 NDUFA11Q86Y39 141 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 PPDPFLQ8WWR9 84 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 PHLDA3Q9Y5J5 127 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 CELSR3Q9NYQ7 3312 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 COL6A3P12111 3177 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 ZNF815PA8K554 130 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 TSPAN13O95857 204 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 TSHBP01222 138 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3-30P01768 117 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 P0DMU3 169 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 FAM231AP0DMU4 169 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 FAM231CP0DMU5 169 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3-30-5P0DP03 117 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 TEN1Q86WV5 123 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 RNF183Q96D59 192 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 AMELXQ99217 191 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 MRPL16Q9NX20 251 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 A0A0B4J2C4 111 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 CCL21O00585 134 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 APOMO95445 188 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHG2P01859 326 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 ANXA2RQ3ZCQ2 193 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 ZFP2Q6ZN57 461 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 C10orf126Q8N4M7 172 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 ZNF418Q8TF45 676 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 C9orf85Q96MD7 179 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 ZNF256Q9Y2P7 627 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 MUC4Q99102 2169 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 TMEM89A2RUT3 159 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 SDHAF1A6NFY7 115 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 TMEM262E9PQX1 116 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 RNASE4P34096 147 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 Q5PR19 223 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 PIK3CD-AS1Q5SR53 167 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 MDFICQ9P1T7 246 aa4.31□□□□□ -1.72
CCDC88A-203ENST00000412148 POLEQ07864 2286 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 G3V318 75 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 IGLV1-40P01703 118 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 KLRB1Q12918 225 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 RPL39LQ96EH5 51 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 GTSF1LQ9H1H1 148 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 LEPROTO15243 131 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 S100A4P26447 101 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 CFHR3Q02985 330 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 SH2D6Q7Z4S9 175 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 C14orf178Q8N769 122 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 PTH2Q96A98 100 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 KIR2DL4Q99706 377 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 PIEZO2Q9H5I5 2752 aa4.3□□□□□ -1.72
CCDC88A-203ENST00000412148 NCOR1O75376 2440 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 LY6HO94772 140 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 TIRAPP58753 221 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 PYGO1Q9Y3Y4 419 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 ABCA1O95477 2261 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 LOC400499M0QZD8 3231 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 LINC01548A6NM66 108 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 DUSP14O95147 198 aaKnown RBP4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 CFC1BP0CG36 223 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 CFC1P0CG37 223 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 PRB4P10163 310 aaPredicted RBP4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 ID1P41134 155 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 SMAGPQ0VAQ4 97 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 SCGB2A2Q13296 93 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 SCGB1D4Q6XE38 83 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 PLEKHB2Q96CS7 222 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 SPXQ9BT56 116 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 PRO1854Q9UHT4 67 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 WDFY4Q6ZS81 3184 aa4.29□□□□□ -1.72
CCDC88A-203ENST00000412148 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3-35A0A0C4DH35 117 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3-66A0A0C4DH42 116 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 A0A1W2PRX2 142 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 TMEM223A0PJW6 202 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 A6NDX4 124 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 SRSF9Q13242 221 aaKnown RBP eCLIP4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 SUMO4Q6EEV6 95 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 AMTNQ6UX39 209 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 Q6ZQT7 251 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 DCANP1Q8TF63 244 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 PPDPFQ9H3Y8 114 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 DAZ1Q9NQZ3 744 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 SPANXA1Q9NS26 97 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 TP53TG1Q9Y2A0 90 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 URB1O60287 2271 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3OR16-8A0A075B7F1 116 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 A8MTW9 85 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 A8MWV9 139 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 J3QQQ9 107 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 RPL13AP40429 203 aaKnown RBP4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 Q6Q795 121 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 UNQ9165/PRO28630Q6UXU0 137 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 TRPT1Q86TN4 253 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms