RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 C11orf1Q9H5F2 150 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 IGKV2D-24A0A075B6R9 120 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 FAM236AA0A1B0GUQ0 79 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 FAM236BA0A1B0GV22 79 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 ANKRD39Q53RE8 183 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 TMEM263Q8WUH6 116 aaKnown RBP4.72□□□□□ -1.65
SCN1A-203ENST00000409050 C4orf3Q8WVX3 66 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 Q96MF0 132 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 TPSG1Q9NRR2 321 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 COL4A6Q14031 1691 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 PLXNA2O75051 1894 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 LYRM9A8MSI8 78 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 J3QKU1 62 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 TRBV12-3P01733 135 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 NOP10Q9NPE3 64 aaKnown RBP4.72□□□□□ -1.65
SCN1A-203ENST00000409050 THSD7BQ9C0I4 1608 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 AMTNQ6UX39 209 aa4.72□□□□□ -1.65
SCN1A-203ENST00000409050 TRAV12-2A0A075B6T6 113 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 IGLV1-47P01700 117 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 PIK3CD-AS1Q5SR53 167 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 PATE2Q6UY27 113 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 C5orf56Q8N8D9 126 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 BRWD3Q6RI45 1802 aa4.71□□□□□ -1.65
SCN1A-203ENST00000409050 IGHV3-38A0A0C4DH36 116 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 A0A0J9YXV3 536 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 COX7BP24311 80 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 XCL1P47992 114 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 WFDC9Q8NEX5 89 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 GNRH2O43555 120 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 Q6ZUT4 128 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 LRRC75A-AS1Q8N1F1 130 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 TP73-AS1Q9UF72 201 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 NDUFS5O43920 106 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 CGB3P0DN86 165 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 C5orf24Q7Z6I8 188 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 NDUFA11Q86Y39 141 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 TMEM61Q8N0U2 210 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 Q8N9W7 124 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 CTSZQ9UBR2 303 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 KLK5Q9Y337 293 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-203ENST00000409050 ICE1Q9Y2F5 2266 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 SPTBP11277 2137 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 P0C879 139 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 GYPEP15421 78 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 B9D2Q9BPU9 175 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 PRO0255Q9UI72 69 aa4.71□□□□□ -1.66
SCN1A-203ENST00000409050 MYOFQ9NZM1 2061 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 IBA57-AS1B1ANH7 110 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 TEX22C9J3V5 150 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 K7ERS5 55 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 MRPS36P82909 103 aaKnown RBP4.7□□□□□ -1.66
SCN1A-203ENST00000409050 AJUBAQ96IF1 538 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 DOCK3Q8IZD9 2030 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 IGLV2-23P01705 113 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 PRSS33Q8NF86 280 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 C10orf105Q8TEF2 133 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 PRR15LQ9BU68 103 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 SPRY4Q9C004 299 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 DNAJC13O75165 2243 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-203ENST00000409050 TRBV30A0A0K0K1B3 111 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 IGKV2-29A2NJV5 120 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-203ENST00000409050 AHCTF1Q8WYP5 2266 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 FXYD2P54710 66 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 DEFB113Q30KQ7 82 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 DKK4Q9UBT3 224 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 PYGO1Q9Y3Y4 419 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 RP1P56715 2156 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 C2orf70A6NJV1 201 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 SPAG11BQ08648 103 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 DEFB112Q30KQ8 113 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 C4orf48Q5BLP8 95 aa4.7□□□□□ -1.66
SCN1A-203ENST00000409050 A0A0J9YX75 114 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 ZNF503-AS2A6NEH8 195 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 CRYGBP07316 175 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 EP300Q09472 2414 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-203ENST00000409050 IGKV1OR2-108A0A075B7D4 117 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 CGB7P0DN87 165 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 GTSF1Q8WW33 167 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 IGLC6P0CF74 106 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 CFHR3Q02985 330 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 EIF4EBP1Q13541 118 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-203ENST00000409050 MRGPRG-AS1Q2M3A8 158 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 TRBV6-5A0A0K0K1A5 114 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 FAM240AA0A1B0GVK7 77 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 MRPL55Q7Z7F7 128 aaKnown RBP4.69□□□□□ -1.66
SCN1A-203ENST00000409050 UPK3BQ9BT76 320 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 HHLA3Q9XRX5 114 aa4.69□□□□□ -1.66
SCN1A-203ENST00000409050 LECT2O14960 151 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 UBE2AP49459 152 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 NDUFC2-KCTD14E9PQ53 114 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 WT1P19544 449 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-203ENST00000409050 Q6Q795 121 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 C5orf38Q86SI9 138 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 RPL39LQ96EH5 51 aaKnown RBP4.68□□□□□ -1.66
SCN1A-203ENST00000409050 C17orf77Q96MU5 243 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 ZNRD1Q9P1U0 126 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 U3KQK5 164 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 THADAQ6YHU6 1953 aa4.68□□□□□ -1.66
SCN1A-203ENST00000409050 BPY2O14599 106 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms