RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SLC50A1Q9BRV3 221 aa15.89■□□□□ 0.13
CTCF-202ENST00000401394 SMCPP49901 116 aaPredicted RBP15.88■□□□□ 0.13
CTCF-202ENST00000401394 SCGB2A2Q13296 93 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 ZFAND2AQ8N6M9 145 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 RAXQ9Y2V3 346 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 UTP20O75691 2785 aaKnown RBP15.88■□□□□ 0.13
CTCF-202ENST00000401394 LOC107984156A0A0G2JMH3 177 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 ARL17AQ8IVW1 177 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 NEXN-AS1Q8NBZ9 246 aa15.88■□□□□ 0.13
CTCF-202ENST00000401394 ZNF815PA8K554 130 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 C11orf71Q6IPW1 123 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 UBTD1Q9HAC8 227 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 SCGB1D4Q6XE38 83 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 MRPL16Q9NX20 251 aaKnown RBP15.87■□□□□ 0.13
CTCF-202ENST00000401394 RBAKDNA6NC62 111 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 PHLDA3Q9Y5J5 127 aa15.87■□□□□ 0.13
CTCF-202ENST00000401394 A0A087WWL8 130 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 Q5PR19 223 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 C9orf47Q6ZRZ4 202 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 Q6ZS46 218 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 ZANQ9Y493 2812 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 F8W1H4 67 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 PLNP26678 52 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 NFE4Q86UQ8 179 aa15.86■□□□□ 0.13
CTCF-202ENST00000401394 FHL3Q13643 280 aa15.85■□□□□ 0.13
CTCF-202ENST00000401394 OPRPNQ99935 248 aaPredicted RBP15.85■□□□□ 0.13
CTCF-202ENST00000401394 SCGB2A1O75556 95 aa15.85■□□□□ 0.13
CTCF-202ENST00000401394 PSMB2P49721 201 aa15.85■□□□□ 0.13
CTCF-202ENST00000401394 LY6EQ16553 131 aa15.85■□□□□ 0.13
CTCF-202ENST00000401394 HOXA3O43365 443 aaPredicted RBP15.84■□□□□ 0.13
CTCF-202ENST00000401394 TSHBP01222 138 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 CRYGDP07320 174 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 SRSF9Q13242 221 aaKnown RBP eCLIP15.84■□□□□ 0.13
CTCF-202ENST00000401394 EEF1AKMT3Q96AZ1 226 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 BPESC1Q9GZL8 116 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 TOMM6Q96B49 74 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 CENPVL3A0A0U1RRI6 287 aa15.84■□□□□ 0.13
CTCF-202ENST00000401394 C11orf86A6NJI1 115 aa15.83■□□□□ 0.12
CTCF-202ENST00000401394 CENPEQ02224 2701 aa15.83■□□□□ 0.12
CTCF-202ENST00000401394 TSPEAR-AS2P59090 65 aa15.83■□□□□ 0.12
CTCF-202ENST00000401394 IGHV3-64A0A075B6Q5 118 aa15.82■□□□□ 0.12
CTCF-202ENST00000401394 K7ENP7 123 aa15.82■□□□□ 0.12
CTCF-202ENST00000401394 IGKV3-20P01619 116 aa15.82■□□□□ 0.12
CTCF-202ENST00000401394 RNASE3P12724 160 aaKnown RBP15.81■□□□□ 0.12
CTCF-202ENST00000401394 MINOS1Q5TGZ0 78 aa15.81■□□□□ 0.12
CTCF-202ENST00000401394 TMEM190Q8WZ59 177 aa15.81■□□□□ 0.12
CTCF-202ENST00000401394 MINOS1-NBL1R4GNA1 71 aa15.81■□□□□ 0.12
CTCF-202ENST00000401394 ITLN2Q8WWU7 325 aaPredicted RBP15.81■□□□□ 0.12
CTCF-202ENST00000401394 C5orf56Q8N8D9 126 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 USP9YO00507 2555 aaPredicted RBP15.8■□□□□ 0.12
CTCF-202ENST00000401394 IGHV4-4A0A075B6R2 117 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 PRSS47A8MTI9 375 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 NDUFS8O00217 210 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 TSPAN13O95857 204 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 SYT8Q8NBV8 401 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 CLUHP3Q96NS8 147 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 TP53TG1Q9Y2A0 90 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 U3KQE9 123 aa15.8■□□□□ 0.12
CTCF-202ENST00000401394 FAM74A4Q5TZK3 123 aa15.79■□□□□ 0.12
CTCF-202ENST00000401394 DPH3P1Q9H4G8 78 aa15.79■□□□□ 0.12
CTCF-202ENST00000401394 POLQO75417 2590 aa15.79■□□□□ 0.12
CTCF-202ENST00000401394 ASIPP42127 132 aa15.78■□□□□ 0.12
CTCF-202ENST00000401394 MRAP2Q96G30 205 aa15.78■□□□□ 0.12
CTCF-202ENST00000401394 UBE2E1P51965 193 aa15.78■□□□□ 0.12
CTCF-202ENST00000401394 TRAV41A0A0B4J266 112 aa15.78■□□□□ 0.12
CTCF-202ENST00000401394 ORMDL2Q53FV1 153 aa15.78■□□□□ 0.12
CTCF-202ENST00000401394 NOTCH3Q9UM47 2321 aa15.77■□□□□ 0.12
CTCF-202ENST00000401394 TRAV12-1A0A0B4J245 112 aa15.77■□□□□ 0.12
CTCF-202ENST00000401394 F5H697 171 aa15.77■□□□□ 0.12
CTCF-202ENST00000401394 ZNF580Q9UK33 172 aa15.77■□□□□ 0.12
CTCF-202ENST00000401394 ITPR1Q14643 2758 aa15.77■□□□□ 0.12
CTCF-202ENST00000401394 IGLV4-69A0A075B6H9 119 aa15.77■□□□□ 0.11
CTCF-202ENST00000401394 H7C2G1 150 aa15.77■□□□□ 0.11
CTCF-202ENST00000401394 COX6B1P14854 86 aa15.77■□□□□ 0.11
CTCF-202ENST00000401394 RAB9AP51151 201 aa15.77■□□□□ 0.11
CTCF-202ENST00000401394 TAL2Q16559 108 aa15.76■□□□□ 0.11
CTCF-202ENST00000401394 OR10J6PQ8NGY7 276 aa15.76■□□□□ 0.11
CTCF-202ENST00000401394 KIR2DL4Q99706 377 aa15.76■□□□□ 0.11
CTCF-202ENST00000401394 NPFFO15130 113 aa15.76■□□□□ 0.11
CTCF-202ENST00000401394 ZNF256Q9Y2P7 627 aaPredicted RBP15.76■□□□□ 0.11
CTCF-202ENST00000401394 TRBV7-1A0A0A6YYK4 115 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 MT-ATP8P03928 68 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 BLCAPP62952 87 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 TMEM170BQ5T4T1 132 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 SPATA25Q9BR10 227 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 TRAV12-2A0A075B6T6 113 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 ZNRF2Q8NHG8 242 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 TRAV21A0A0B4J279 112 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 CFAP126Q5VTH2 177 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 C1orf122Q6ZSJ8 110 aa15.75■□□□□ 0.11
CTCF-202ENST00000401394 OOSP1A8MZH6 123 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 LMO4P61968 165 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 FOXI1Q12951 378 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 RAX2Q96IS3 184 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 LINC00477Q96M19 166 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 FLNCQ14315 2725 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 LINC00315P59091 139 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 CDIP1Q9H305 208 aa15.74■□□□□ 0.11
CTCF-202ENST00000401394 TRAV12-3A0A0B4J271 114 aa15.73■□□□□ 0.11
CTCF-202ENST00000401394 SOCS3O14543 225 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms