RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 MSGN1A6NI15 193 aa6.34□□□□□ -1.39
LIMS1-203ENST00000393310 CYTL1Q9NRR1 136 aa6.34□□□□□ -1.39
LIMS1-203ENST00000393310 IGHV3-43A0A0B4J1X8 118 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 IGHV3-43DP0DP04 118 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 RIGQ13278 110 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 KRTAP1-3Q8IUG1 177 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 ZC2HC1AQ96GY0 325 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 DSCR8Q96T75 97 aa6.34□□□□□ -1.4
LIMS1-203ENST00000393310 PQLC2Q6ZP29 291 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 NCOA6Q14686 2063 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-203ENST00000393310 TRGV11A0A075B6L2 103 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 TRAV10A0A0B4J240 114 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 IGHV1-3A0A0C4DH29 117 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 NTN5Q8WTR8 489 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-203ENST00000393310 C12orf73Q69YU5 71 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 OR10AC1Q8NH08 325 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 PSENENQ9NZ42 101 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 WDR83OSQ9Y284 106 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 CSMD3Q7Z407 3707 aa6.33□□□□□ -1.4
LIMS1-203ENST00000393310 TRBV7-1A0A0A6YYK4 115 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 GATA1P15976 413 aaPredicted RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 CACNG7P62955 275 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 SPANXN5Q5MJ07 72 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 LSM2Q9Y333 95 aaKnown RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 GATA2P23769 480 aaPredicted RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 DAZ2Q13117 558 aaKnown RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 DAZ4Q86SG3 579 aaKnown RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 DAZ1Q9NQZ3 744 aaKnown RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 DAZ3Q9NR90 486 aaKnown RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 MGAM2Q2M2H8 2515 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 H3BT86 120 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 SPART-AS1P0CW21 52 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 MPLKIPQ8TAP9 179 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 PYGO1Q9Y3Y4 419 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 IGLL5B9A064 214 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 ATP5EP56381 51 aaPredicted RBP6.32□□□□□ -1.4
LIMS1-203ENST00000393310 BEAN1Q3B7T3 259 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 TM2D2Q9BX73 214 aa6.32□□□□□ -1.4
LIMS1-203ENST00000393310 STAB1Q9NY15 2570 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 IGHV3OR16-12A0A075B7B8 117 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 SRSF10O75494 262 aaKnown RBP6.31□□□□□ -1.4
LIMS1-203ENST00000393310 UFSP1Q6NVU6 142 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 FGFBP3Q8TAT2 258 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 NPCDR1Q9BY65 106 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 AGPAT4-IT1Q9H0P7 198 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 IGKV3-7A0A075B6H7 116 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 RBAKDNA6NC62 111 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 LINC01548A6NM66 108 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 INAFM2P0DMQ5 153 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 C1orf229Q6ZS94 237 aaPredicted RBP6.31□□□□□ -1.4
LIMS1-203ENST00000393310 WFDC9Q8NEX5 89 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 ZNF106Q9H2Y7 1883 aaKnown RBP6.31□□□□□ -1.4
LIMS1-203ENST00000393310 TRBV6-7A0A0A0MS04 114 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 FOXA3P55318 350 aaPredicted RBP6.31□□□□□ -1.4
LIMS1-203ENST00000393310 INSL4Q14641 139 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 HOGA1Q86XE5 327 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 PRR14LQ5THK1 2151 aa6.31□□□□□ -1.4
LIMS1-203ENST00000393310 YPEL3P61236 119 aaPredicted RBP6.3□□□□□ -1.4
LIMS1-203ENST00000393310 HBBP68871 147 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 OTORQ9NRC9 128 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 FSTP19883 344 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 FUSP35637 526 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMS1-203ENST00000393310 RPS27P42677 84 aaKnown RBP6.3□□□□□ -1.4
LIMS1-203ENST00000393310 C8orf82Q6P1X6 216 aaPredicted RBP6.3□□□□□ -1.4
LIMS1-203ENST00000393310 NFE4Q86UQ8 179 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 PLAC8L1A1L4L8 177 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 CRYGDP07320 174 aa6.3□□□□□ -1.4
LIMS1-203ENST00000393310 TAF15Q92804 592 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMS1-203ENST00000393310 NCR2O95944 276 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 NPYP01303 97 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 FAM90A2PQ658T7 463 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 EXOC3-AS1Q8N2X6 119 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 TMEM167AQ8TBQ9 72 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 PYGO2Q9BRQ0 406 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 TAS2R4Q9NYW5 299 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 ZNF815PA8K554 130 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 SMKR1H3BMG3 65 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 CX3CL1P78423 397 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 MRPS36P82909 103 aaKnown RBP6.29□□□□□ -1.4
LIMS1-203ENST00000393310 C12orf74Q32Q52 190 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 LINC00114Q6XXX2 140 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 LINC00311Q8N616 119 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 SAA2-SAA4A0A096LPE2 208 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 J3QL48 77 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 KRTAP1-1Q07627 177 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 Q6ZR03 302 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 MED12LQ86YW9 2145 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 TMEM272A0A1B0GTI8 110 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 YPEL1O60688 119 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 VSIG8P0DPA2 414 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 LINC00643Q86TS7 51 aa6.29□□□□□ -1.4
LIMS1-203ENST00000393310 TRAV4A0A0B4J268 109 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 K7ERJ3 54 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 FRMD6-AS1P0C7T7 363 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 CD24P25063 80 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 BLCAPP62952 87 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 UBE2BP63146 152 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 ZNF702PQ9H963 129 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 OSTCQ9NRP0 149 aa6.28□□□□□ -1.4
LIMS1-203ENST00000393310 TMEM167BQ9NRX6 74 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms