RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SRSF9Q13242 221 aaKnown RBP eCLIP16.02■□□□□ 0.15
UPF3A-202ENST00000375299 TCTEX1D4Q5JR98 221 aa16.02■□□□□ 0.15
UPF3A-202ENST00000375299 SPTA1P02549 2419 aa16.02■□□□□ 0.15
UPF3A-202ENST00000375299 UBE2E1P51965 193 aa16.01■□□□□ 0.15
UPF3A-202ENST00000375299 MED14OSP0DP75 135 aa16.01■□□□□ 0.15
UPF3A-202ENST00000375299 ANXA2RQ3ZCQ2 193 aa16■□□□□ 0.15
UPF3A-202ENST00000375299 OR10J6PQ8NGY7 276 aa16■□□□□ 0.15
UPF3A-202ENST00000375299 OVOL1O14753 267 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 PPP1R17O96001 155 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 PSMB2P49721 201 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 CKS1BP61024 79 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 SYT8Q8NBV8 401 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 LOC107984156A0A0G2JMH3 177 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 CRYGDP07320 174 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 SAA4P35542 130 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 UBE2D3P61077 147 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 UBE2D2P62837 147 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 ARL17AQ8IVW1 177 aa15.99■□□□□ 0.15
UPF3A-202ENST00000375299 DUSP14O95147 198 aaKnown RBP15.98■□□□□ 0.15
UPF3A-202ENST00000375299 CD7P09564 240 aa15.98■□□□□ 0.15
UPF3A-202ENST00000375299 GPHB5Q86YW7 130 aa15.98■□□□□ 0.15
UPF3A-202ENST00000375299 KLHL30-AS1Q8NEE0 82 aa15.98■□□□□ 0.15
UPF3A-202ENST00000375299 KLRB1Q12918 225 aa15.98■□□□□ 0.15
UPF3A-202ENST00000375299 NFE4Q86UQ8 179 aa15.98■□□□□ 0.15
UPF3A-202ENST00000375299 CDIP1Q9H305 208 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 IGLV4-69A0A075B6H9 119 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 IGHV1-69DA0A0B4J2H0 117 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 C11orf86A6NJI1 115 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 HERVK_113P61574 105 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 LYRM7Q5U5X0 104 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 SFTA2Q6UW10 78 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 ZFP2Q6ZN57 461 aa15.97■□□□□ 0.15
UPF3A-202ENST00000375299 SOCS3O14543 225 aa15.96■□□□□ 0.15
UPF3A-202ENST00000375299 PAPPA-AS1Q5QFB9 102 aa15.96■□□□□ 0.15
UPF3A-202ENST00000375299 POM121L12Q8N7R1 296 aa15.96■□□□□ 0.15
UPF3A-202ENST00000375299 C5orf56Q8N8D9 126 aa15.96■□□□□ 0.15
UPF3A-202ENST00000375299 A0A0J9YY99 117 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 TSHBP01222 138 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 DEFB1P60022 68 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 RNASE3P12724 160 aaKnown RBP15.95■□□□□ 0.14
UPF3A-202ENST00000375299 ARL3P36405 182 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 NDUFA11Q86Y39 141 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 FAM19A4Q96LR4 140 aa15.95■□□□□ 0.14
UPF3A-202ENST00000375299 FAM223BA6NKX1 122 aa15.94■□□□□ 0.14
UPF3A-202ENST00000375299 GNRH2O43555 120 aa15.94■□□□□ 0.14
UPF3A-202ENST00000375299 RNASE4P34096 147 aaKnown RBP15.94■□□□□ 0.14
UPF3A-202ENST00000375299 FAM223AQ8IWN6 122 aa15.94■□□□□ 0.14
UPF3A-202ENST00000375299 ZNF418Q8TF45 676 aaPredicted RBP15.94■□□□□ 0.14
UPF3A-202ENST00000375299 TP53TG1Q9Y2A0 90 aa15.94■□□□□ 0.14
UPF3A-202ENST00000375299 APRG1Q8IVJ8 170 aa15.93■□□□□ 0.14
UPF3A-202ENST00000375299 NBASA2RRP1 2371 aa15.93■□□□□ 0.14
UPF3A-202ENST00000375299 TRAV41A0A0B4J266 112 aa15.93■□□□□ 0.14
UPF3A-202ENST00000375299 UCNP55089 124 aa15.93■□□□□ 0.14
UPF3A-202ENST00000375299 RPL32P62910 135 aaKnown RBP15.93■□□□□ 0.14
UPF3A-202ENST00000375299 UNQ9165/PRO28630Q6UXU0 137 aa15.93■□□□□ 0.14
UPF3A-202ENST00000375299 IGIPA6NJ69 53 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 PMVKQ15126 192 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 NXPH4O95158 308 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 CRYBA4P53673 196 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 EMP1P54849 157 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 FHL3Q13643 280 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 PTH2Q96A98 100 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 KIF25-AS1Q9Y6Z4 181 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 IGF2RP11717 2491 aa15.92■□□□□ 0.14
UPF3A-202ENST00000375299 C19orf54Q5BKX5 351 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 PPDPFLQ8WWR9 84 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 LINC00527Q9UJ94 153 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 ASH1LQ9NR48 2969 aaKnown RBP15.91■□□□□ 0.14
UPF3A-202ENST00000375299 IGHV4OR15-8A0A075B7B6 117 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 A0A087WW49 117 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 TCL1BO95988 128 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 LINC00315P59091 139 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 TEN1Q86WV5 123 aa15.91■□□□□ 0.14
UPF3A-202ENST00000375299 A0A1W2PPR1 153 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 NDUFA4O00483 81 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 NPFFO15130 113 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 IGHV3-30P01768 117 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 SPINK8P0C7L1 97 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 IGHV3-30-5P0DP03 117 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 CARD19Q96LW7 228 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 F6UB75 175 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 Q6ZS46 218 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 TMEM141Q96I45 108 aa15.9■□□□□ 0.14
UPF3A-202ENST00000375299 MUC4Q99102 2169 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 TRBV20-1A0A075B6N2 111 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 TRBV12-3P01733 135 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 POLR2KP53803 58 aaKnown RBP15.89■□□□□ 0.13
UPF3A-202ENST00000375299 TSPEAR-AS2P59090 65 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 TMEM219Q86XT9 240 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 CACNA1BQ00975 2339 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 CFC1BP0CG36 223 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 CFC1P0CG37 223 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 SBSPONQ8IVN8 264 aa15.89■□□□□ 0.13
UPF3A-202ENST00000375299 ATRXP46100 2492 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 TRBV7-9A0A0J9YWB2 115 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 MT-ATP8P03928 68 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 Q6ZUT4 128 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 SLC25A29Q8N8R3 303 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 TIMM17AQ99595 171 aa15.88■□□□□ 0.13
UPF3A-202ENST00000375299 GEMIN7Q9H840 131 aaKnown RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms