RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 LYZL1Q6UWQ5 148 aa13.63□□□□□ -0.23
CHMP4A-201ENST00000347519 NUP35Q8NFH5 326 aa13.63□□□□□ -0.23
CHMP4A-201ENST00000347519 C16orf74Q96GX8 76 aa13.63□□□□□ -0.23
CHMP4A-201ENST00000347519 SSBP4Q9BWG4 385 aaPredicted RBP13.63□□□□□ -0.23
CHMP4A-201ENST00000347519 TMEM242Q9NWH2 141 aa13.63□□□□□ -0.23
CHMP4A-201ENST00000347519 EMP1P54849 157 aa13.62□□□□□ -0.23
CHMP4A-201ENST00000347519 SSTP61278 116 aa13.62□□□□□ -0.23
CHMP4A-201ENST00000347519 OR10AG1Q8NH19 301 aa13.62□□□□□ -0.23
CHMP4A-201ENST00000347519 GFRA4Q9GZZ7 299 aa13.62□□□□□ -0.23
CHMP4A-201ENST00000347519 MED14OSP0DP75 135 aa13.61□□□□□ -0.23
CHMP4A-201ENST00000347519 MIFP14174 115 aa13.61□□□□□ -0.23
CHMP4A-201ENST00000347519 CTRLP40313 264 aa13.61□□□□□ -0.23
CHMP4A-201ENST00000347519 ZNF493Q6ZR52 646 aa13.61□□□□□ -0.23
CHMP4A-201ENST00000347519 CBLN2Q8IUK8 224 aa13.61□□□□□ -0.23
CHMP4A-201ENST00000347519 FAM231BA6NCW3 169 aa13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 SPINK4O60575 86 aa13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 OR5AL1P0C617 328 aa13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 TMEM88Q6PEY1 159 aa13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 NOP10Q9NPE3 64 aaKnown RBP13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 URGCP-MRPS24S4R325 110 aa13.6□□□□□ -0.23
CHMP4A-201ENST00000347519 A0A1W2PPQ1 181 aa13.59□□□□□ -0.23
CHMP4A-201ENST00000347519 MRPL16Q9NX20 251 aaKnown RBP13.59□□□□□ -0.23
CHMP4A-201ENST00000347519 NAT8BQ9UHF3 227 aa13.59□□□□□ -0.23
CHMP4A-201ENST00000347519 SNURFLB1AK76 121 aa13.58□□□□□ -0.23
CHMP4A-201ENST00000347519 DMRTA1Q5VZB9 504 aa13.58□□□□□ -0.23
CHMP4A-201ENST00000347519 IMMP2LQ96T52 175 aa13.58□□□□□ -0.23
CHMP4A-201ENST00000347519 MSRB1Q9NZV6 116 aa13.58□□□□□ -0.23
CHMP4A-201ENST00000347519 DAZ2Q13117 558 aaKnown RBP13.58□□□□□ -0.24
CHMP4A-201ENST00000347519 YPEL4Q96NS1 127 aa13.58□□□□□ -0.24
CHMP4A-201ENST00000347519 SPXQ9BT56 116 aa13.58□□□□□ -0.24
CHMP4A-201ENST00000347519 CELA1Q9UNI1 258 aa13.58□□□□□ -0.24
CHMP4A-201ENST00000347519 PHLDA3Q9Y5J5 127 aa13.58□□□□□ -0.24
CHMP4A-201ENST00000347519 F2Z2F3 143 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 M0R2P5 195 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 M0R381 172 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 NXPH4O95158 308 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 Q6ZTI0 123 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 CNFNQ9BYD5 112 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 ZMAT4Q9H898 229 aa13.57□□□□□ -0.24
CHMP4A-201ENST00000347519 COL7A1Q02388 2944 aa13.56□□□□□ -0.24
CHMP4A-201ENST00000347519 MRPL54Q6P161 138 aaKnown RBP13.56□□□□□ -0.24
CHMP4A-201ENST00000347519 JPT2Q9H910 190 aa13.56□□□□□ -0.24
CHMP4A-201ENST00000347519 SMCO4Q9NRQ5 59 aa13.56□□□□□ -0.24
CHMP4A-201ENST00000347519 IGHV4-4A0A075B6R2 117 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 TRGV1A0A0A0MS02 117 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 A0A0J9YWU9 116 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 CXorf65A6NEN9 183 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 NTF3P20783 257 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 ELOBQ15370 118 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 ZNF876PQ49A33 203 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 FAM222AQ5U5X8 452 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 SPANXN1Q5VSR9 72 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 DKK2Q9UBU2 259 aa13.55□□□□□ -0.24
CHMP4A-201ENST00000347519 NACAE9PAV3 2078 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 TGIF2-C20orf24A0A0A6YYL0 155 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 A0A1B0GUT8 65 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 CACNG7P62955 275 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 WDR73Q6P4I2 378 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 KCNIP4Q6PIL6 250 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 ZFP82Q8N141 532 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 PTH2Q96A98 100 aa13.54□□□□□ -0.24
CHMP4A-201ENST00000347519 A0A1B0GXF2 115 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 GAGE12BA1L429 117 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 GAGE7O76087 117 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 GAGE12FP0CL80 117 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 GAGE12GP0CL81 117 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 GAGE12IP0CL82 117 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 S100PP25815 95 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 LINC00612Q8N6U2 182 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 RASL10AQ92737 203 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 BTF3L4Q96K17 158 aa13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 C11orf68Q9H3H3 251 aaKnown RBP13.53□□□□□ -0.24
CHMP4A-201ENST00000347519 TWIST1Q15672 202 aa13.52□□□□□ -0.25
CHMP4A-201ENST00000347519 POM121L12Q8N7R1 296 aa13.52□□□□□ -0.25
CHMP4A-201ENST00000347519 SAMD10Q9BYL1 202 aa13.52□□□□□ -0.25
CHMP4A-201ENST00000347519 NHLRC4P0CG21 123 aaPredicted RBP13.51□□□□□ -0.25
CHMP4A-201ENST00000347519 RIGQ13278 110 aa13.51□□□□□ -0.25
CHMP4A-201ENST00000347519 LGALS9BQ3B8N2 356 aa13.51□□□□□ -0.25
CHMP4A-201ENST00000347519 SYT8Q8NBV8 401 aa13.51□□□□□ -0.25
CHMP4A-201ENST00000347519 TRAV9-1A0A075B6T8 112 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 LYRM9A8MSI8 78 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 DEFB130BP0DP73 79 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 DEFB130AP0DP74 79 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 CAMPP49913 170 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 BORCS7Q96B45 105 aa13.5□□□□□ -0.25
CHMP4A-201ENST00000347519 EVI2AP22794 236 aa13.49□□□□□ -0.25
CHMP4A-201ENST00000347519 TRBV24-1A0A075B6N3 115 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 RS1O15537 224 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 SPART-AS1P0CW21 52 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 CFAP126Q5VTH2 177 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 ATP5L2Q7Z4Y8 100 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 C14orf178Q8N769 122 aaPredicted RBP13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 KIF25-AS1Q9Y6Z4 181 aa13.48□□□□□ -0.25
CHMP4A-201ENST00000347519 A0A087WWL8 130 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 COLCA2A8K830 154 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 IGHV3-53P01767 116 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 CRYGDP07320 174 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 HBBP68871 147 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 C12orf74Q32Q52 190 aa13.47□□□□□ -0.25
CHMP4A-201ENST00000347519 PIK3CD-AS1Q5SR53 167 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms