RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PSMB2P49721 201 aa16.99■□□□□ 0.31
TRIM28-202ENST00000341753 ORMDL2Q53FV1 153 aa16.99■□□□□ 0.31
TRIM28-202ENST00000341753 SRSF9Q13242 221 aaKnown RBP eCLIP16.99■□□□□ 0.31
TRIM28-202ENST00000341753 Q5PR19 223 aa16.99■□□□□ 0.31
TRIM28-202ENST00000341753 PTH2Q96A98 100 aa16.99■□□□□ 0.31
TRIM28-202ENST00000341753 A0A1B0GV72 72 aa16.98■□□□□ 0.31
TRIM28-202ENST00000341753 C19orf84I3L1E1 186 aa16.98■□□□□ 0.31
TRIM28-202ENST00000341753 SYT8Q8NBV8 401 aa16.98■□□□□ 0.31
TRIM28-202ENST00000341753 TGFAP01135 160 aa16.97■□□□□ 0.31
TRIM28-202ENST00000341753 NFE4Q86UQ8 179 aa16.97■□□□□ 0.31
TRIM28-202ENST00000341753 GLMPQ8WWB7 406 aa16.97■□□□□ 0.31
TRIM28-202ENST00000341753 CLUHP3Q96NS8 147 aa16.97■□□□□ 0.31
TRIM28-202ENST00000341753 SPG11Q96JI7 2443 aa16.96■□□□□ 0.31
TRIM28-202ENST00000341753 RNF223E7ERA6 249 aa16.96■□□□□ 0.31
TRIM28-202ENST00000341753 CKS1BP61024 79 aa16.96■□□□□ 0.31
TRIM28-202ENST00000341753 PHLDA3Q9Y5J5 127 aa16.96■□□□□ 0.31
TRIM28-202ENST00000341753 IGKV3-7A0A075B6H7 116 aa16.96■□□□□ 0.3
TRIM28-202ENST00000341753 FOXI1Q12951 378 aa16.96■□□□□ 0.3
TRIM28-202ENST00000341753 EEF1AKMT3Q96AZ1 226 aa16.96■□□□□ 0.3
TRIM28-202ENST00000341753 PKD1L2Q7Z442 2459 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 DUSP14O95147 198 aaKnown RBP16.95■□□□□ 0.3
TRIM28-202ENST00000341753 TSPAN13O95857 204 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 CFAP126Q5VTH2 177 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 GNRH2O43555 120 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 MINOS1Q5TGZ0 78 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 MINOS1-NBL1R4GNA1 71 aa16.95■□□□□ 0.3
TRIM28-202ENST00000341753 F6UB75 175 aa16.94■□□□□ 0.3
TRIM28-202ENST00000341753 ANXA2RQ3ZCQ2 193 aa16.94■□□□□ 0.3
TRIM28-202ENST00000341753 DLX4Q92988 240 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-202ENST00000341753 C1QTNF4Q9BXJ3 329 aa16.94■□□□□ 0.3
TRIM28-202ENST00000341753 DPH3P1Q9H4G8 78 aa16.94■□□□□ 0.3
TRIM28-202ENST00000341753 FHL3Q13643 280 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 ZFAND2AQ8N6M9 145 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 SPOCK3Q9BQ16 436 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 CFAP46Q8IYW2 2715 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 OOSP1A8MZH6 123 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 LINC01619G3V211 115 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 RNASE4P34096 147 aaKnown RBP16.93■□□□□ 0.3
TRIM28-202ENST00000341753 TMEM219Q86XT9 240 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 BPESC1Q9GZL8 116 aa16.93■□□□□ 0.3
TRIM28-202ENST00000341753 SAA4P35542 130 aa16.92■□□□□ 0.3
TRIM28-202ENST00000341753 MRPL53Q96EL3 112 aaKnown RBP16.92■□□□□ 0.3
TRIM28-202ENST00000341753 CRYBG3Q68DQ2 2970 aa16.92■□□□□ 0.3
TRIM28-202ENST00000341753 CELSR2Q9HCU4 2923 aa16.92■□□□□ 0.3
TRIM28-202ENST00000341753 IGHV3OR16-10A0A075B7F0 116 aa16.92■□□□□ 0.3
TRIM28-202ENST00000341753 C11orf86A6NJI1 115 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 GNLYP22749 145 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 ASIPP42127 132 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 AJUBAQ96IF1 538 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 CDIP1Q9H305 208 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 CSMD2Q7Z408 3487 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 COX6B1P14854 86 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 UNQ9165/PRO28630Q6UXU0 137 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 SIRPDQ9H106 197 aa16.91■□□□□ 0.3
TRIM28-202ENST00000341753 TRBV12-3P01733 135 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 CRYGDP07320 174 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 ARL3P36405 182 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 RPL11P62913 178 aaKnown RBP16.9■□□□□ 0.3
TRIM28-202ENST00000341753 U3KQE9 123 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 UTP20O75691 2785 aaKnown RBP16.9■□□□□ 0.3
TRIM28-202ENST00000341753 TMEM238LA0A1B0GVL6 79 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 A6NJY4 79 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 MT-ATP8P03928 68 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 UBE2D1P51668 147 aa16.9■□□□□ 0.3
TRIM28-202ENST00000341753 ITLN2Q8WWU7 325 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-202ENST00000341753 Q6ZS46 218 aa16.89■□□□□ 0.29
TRIM28-202ENST00000341753 GPHB5Q86YW7 130 aa16.89■□□□□ 0.29
TRIM28-202ENST00000341753 TRAV21A0A0B4J279 112 aa16.89■□□□□ 0.29
TRIM28-202ENST00000341753 RPL39P62891 51 aaKnown RBP16.89■□□□□ 0.29
TRIM28-202ENST00000341753 JPT2Q9H910 190 aa16.89■□□□□ 0.29
TRIM28-202ENST00000341753 TRBV7-1A0A0A6YYK4 115 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 TSHBP01222 138 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 C1orf122Q6ZSJ8 110 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 OR10J6PQ8NGY7 276 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 TP53TG1Q9Y2A0 90 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 FLNCQ14315 2725 aa16.88■□□□□ 0.29
TRIM28-202ENST00000341753 CD7P09564 240 aa16.87■□□□□ 0.29
TRIM28-202ENST00000341753 PIEZO1Q92508 2521 aa16.87■□□□□ 0.29
TRIM28-202ENST00000341753 SPINK8P0C7L1 97 aa16.87■□□□□ 0.29
TRIM28-202ENST00000341753 TSPEAR-AS2P59090 65 aa16.87■□□□□ 0.29
TRIM28-202ENST00000341753 C9orf139Q6ZV77 190 aa16.87■□□□□ 0.29
TRIM28-202ENST00000341753 IGLV4-69A0A075B6H9 119 aa16.86■□□□□ 0.29
TRIM28-202ENST00000341753 TRAV26-1A0A087WT03 109 aa16.86■□□□□ 0.29
TRIM28-202ENST00000341753 TCL1BO95988 128 aa16.86■□□□□ 0.29
TRIM28-202ENST00000341753 CARD19Q96LW7 228 aa16.86■□□□□ 0.29
TRIM28-202ENST00000341753 RNASE3P12724 160 aaKnown RBP16.85■□□□□ 0.29
TRIM28-202ENST00000341753 NDUFA11Q86Y39 141 aa16.85■□□□□ 0.29
TRIM28-202ENST00000341753 ABCA2Q9BZC7 2435 aa16.85■□□□□ 0.29
TRIM28-202ENST00000341753 A0A0J9YY99 117 aa16.85■□□□□ 0.29
TRIM28-202ENST00000341753 XGP55808 180 aa16.85■□□□□ 0.29
TRIM28-202ENST00000341753 CENPVL3A0A0U1RRI6 287 aa16.84■□□□□ 0.29
TRIM28-202ENST00000341753 LMO4P61968 165 aa16.84■□□□□ 0.29
TRIM28-202ENST00000341753 LINC00477Q96M19 166 aa16.84■□□□□ 0.29
TRIM28-202ENST00000341753 GEMIN7Q9H840 131 aaKnown RBP16.84■□□□□ 0.29
TRIM28-202ENST00000341753 TMEM170BQ5T4T1 132 aa16.84■□□□□ 0.29
TRIM28-202ENST00000341753 MUC4Q99102 2169 aa16.84■□□□□ 0.29
TRIM28-202ENST00000341753 A0A087WWL8 130 aa16.83■□□□□ 0.29
TRIM28-202ENST00000341753 SRD5A1P18405 259 aa16.83■□□□□ 0.29
TRIM28-202ENST00000341753 UBE2D3P61077 147 aa16.83■□□□□ 0.29
TRIM28-202ENST00000341753 UBE2D2P62837 147 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms