RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 KRTAP4-11Q9BYQ6 195 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 IFITM10A6NMD0 228 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 NUPR1O60356 82 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 RNASE3P12724 160 aaKnown RBP3.04□□□□□ -1.92
MCF2-201ENST00000338585 IGLL1P15814 213 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 ASIPP42127 132 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 IQCJQ1A5X6 159 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 COX19Q49B96 90 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 FAM159AQ6UWV7 190 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 TRPT1Q86TN4 253 aaKnown RBP3.04□□□□□ -1.92
MCF2-201ENST00000338585 AMN1Q8IY45 258 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 TMEM256Q8N2U0 113 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 MDFICQ9P1T7 246 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 STAB1Q9NY15 2570 aa3.04□□□□□ -1.92
MCF2-201ENST00000338585 LOC102724200A0A096LPH7 203 aaPredicted RBP3.03□□□□□ -1.92
MCF2-201ENST00000338585 M0R381 172 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 UBE2CO00762 179 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 SNAI2O43623 268 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 OR5AL1P0C617 328 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 HTN1P15515 57 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 S100A4P26447 101 aaKnown RBP3.03□□□□□ -1.92
MCF2-201ENST00000338585 LINC00310P59036 64 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 STHQ8IWL8 128 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 DEFB125Q8N687 156 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 OR2K2Q8NGT1 345 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 CNFNQ9BYD5 112 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 XCL2Q9UBD3 114 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 MUC4Q99102 2169 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 IGHV1OR15-1A0A075B7D0 117 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 IGHV3-16A0A0C4DH30 117 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 GAS8-AS1O95177 125 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 RPL35AP18077 110 aaKnown RBP3.03□□□□□ -1.92
MCF2-201ENST00000338585 HOXA5P20719 270 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 EVI2AP22794 236 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 TDRG1Q3Y452 100 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 C9orf66Q5T8R8 295 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 SPANXN1Q5VSR9 72 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 ZNF493Q6ZR52 646 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 Q8N1Y9 231 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 HIST3H2BBQ8N257 126 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 C3orf56Q8N813 242 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 GATD1Q8NB37 220 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 RCHY1Q96PM5 261 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 ALKBH7Q9BT30 221 aaPredicted RBP3.03□□□□□ -1.92
MCF2-201ENST00000338585 ZNF747Q9BV97 191 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 TRRAPQ9Y4A5 3859 aa3.03□□□□□ -1.92
MCF2-201ENST00000338585 A0A1B0GW15 77 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 SMKR1H3BMG3 65 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 SERF1AO75920 110 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 GIG44P09565 113 aaPredicted RBP3.02□□□□□ -1.93
MCF2-201ENST00000338585 AKR1D1P51857 326 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 COA6Q5JTJ3 125 aaKnown RBP3.02□□□□□ -1.93
MCF2-201ENST00000338585 FAM104BQ5XKR9 115 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 WFDC9Q8NEX5 89 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 C18orf32Q8TCD1 76 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 RNF185Q96GF1 192 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 JPT2Q9H910 190 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 SCRT2Q9NQ03 307 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 IGHV3OR16-12A0A075B7B8 117 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 CBY3A6NI87 242 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 NCR2O95944 276 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 S100A8P05109 93 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 INSL3P51460 131 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 MRPL51Q4U2R6 128 aaKnown RBP3.02□□□□□ -1.93
MCF2-201ENST00000338585 DNLZQ5SXM8 178 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 C12orf54Q6X4T0 127 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 BAGE3Q86Y29 109 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 C1orf158Q8N1D5 194 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 KCNS1Q96KK3 526 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 FAM110AQ9BQ89 295 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 TMEM191AQ9H0A3 160 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 PHLDA3Q9Y5J5 127 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 COL6A5A8TX70 2615 aa3.02□□□□□ -1.93
MCF2-201ENST00000338585 IGHV4-4A0A075B6R2 117 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 TRAV26-2A0A0B4J265 109 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 D6R8Y8 96 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 INSP01308 110 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 MED14OSP0DP75 135 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 FABP4P15090 132 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 GATA1P15976 413 aaPredicted RBP3.01□□□□□ -1.93
MCF2-201ENST00000338585 AZU1P20160 251 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 RAB4AP20338 218 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 CMC4P56277 68 aaPredicted RBP3.01□□□□□ -1.93
MCF2-201ENST00000338585 CACNG7P62955 275 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 Q0VG73 95 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 C14orf178Q8N769 122 aaPredicted RBP3.01□□□□□ -1.93
MCF2-201ENST00000338585 URB1-AS1Q96HZ7 61 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 C9orf85Q96MD7 179 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 LINC01587Q99440 93 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 HIST1H2BLQ99880 126 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 PAX4O43316 350 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 AMBPP02760 352 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 OR10J3Q5JRS4 329 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 SHISA2Q6UWI4 295 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 GTSCR1Q86UQ5 136 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 GSN-AS1Q9NRJ2 163 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 A0A087WWL8 130 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 J3QL48 77 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 NXPH4O95158 308 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 NPYP01303 97 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 174 ms