RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 FAM236AA0A1B0GUQ0 79 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 FAM236BA0A1B0GV22 79 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 SIVA1O15304 175 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 HIST2H2BCQ6DN03 193 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 IGFL3Q6UXB1 125 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 DOCK8Q8NF50 2099 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 C14orf132Q9NPU4 83 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 K7EN84 100 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 MRPL55Q7Z7F7 128 aaKnown RBP9.88□□□□□ -0.83
SDC3-201ENST00000336798 SBF1O95248 1867 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 SEM1Q6ZVN7 128 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 GREB1LQ9C091 1923 aaPredicted RBP9.88□□□□□ -0.83
SDC3-201ENST00000336798 C9orf47Q6ZRZ4 202 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 ATP6V0E2Q8NHE4 81 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 K7EQD1 137 aa9.88□□□□□ -0.83
SDC3-201ENST00000336798 IGKV3D-7A0A0C4DH55 119 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 PROP1O75360 226 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 LINC00311Q8N616 119 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 NCOR1O75376 2440 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 DYSFO75923 2080 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 TAX1BP3O14907 124 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 SPART-AS1P0CW21 52 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 AJUBAQ96IF1 538 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 SPATA25Q9BR10 227 aa9.87□□□□□ -0.83
SDC3-201ENST00000336798 RBX1P62877 108 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 WFDC2Q14508 124 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 DEFB135Q30KP9 77 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 PCP2Q8IVA1 136 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 KMT2EQ8IZD2 1858 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 COX7A2LO14548 114 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 LTAP01374 205 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 FANCD2OSQ96PS1 177 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 C20orf78Q9BR46 151 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 PYGO2Q9BRQ0 406 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 FUSP35637 526 aaKnown RBP eCLIP9.86□□□□□ -0.83
SDC3-201ENST00000336798 C4orf48Q5BLP8 95 aa9.86□□□□□ -0.83
SDC3-201ENST00000336798 IGLV1-44P01699 117 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 C16orf74Q96GX8 76 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 CNOT1A5YKK6 2376 aaKnown RBP9.85□□□□□ -0.83
SDC3-201ENST00000336798 IGHV4OR15-8A0A075B7B6 117 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 A0A087WW49 117 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 IGLL5B9A064 214 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 ATP5G1P05496 136 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 ZFP2Q6ZN57 461 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 C8orf31Q8N9H6 132 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 LTBP1Q14766 1721 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 DEFB1P60022 68 aa9.85□□□□□ -0.83
SDC3-201ENST00000336798 LRCOL1A6NCL2 159 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 CFC1BP0CG36 223 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 CFC1P0CG37 223 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 WT1P19544 449 aaPredicted RBP9.84□□□□□ -0.83
SDC3-201ENST00000336798 CFPP27918 469 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 CENPVL3A0A0U1RRI6 287 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 FAM231DQ6ZW35 169 aa9.84□□□□□ -0.83
SDC3-201ENST00000336798 ZFP36P26651 326 aaKnown RBP9.83□□□□□ -0.84
SDC3-201ENST00000336798 GTF3C1Q12789 2109 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 RBAKDNA6NC62 111 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 TM2D2Q9BX73 214 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 SND1-IT1Q9HBX3 110 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 A0A1B0GX51 115 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 FOXI1Q12951 378 aa9.83□□□□□ -0.84
SDC3-201ENST00000336798 ZNF493Q6ZR52 646 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 MSRB1Q9NZV6 116 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 PLA2G2CQ5R387 149 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 VSIG2Q96IQ7 327 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 MRPL36Q9P0J6 103 aaKnown RBP9.82□□□□□ -0.84
SDC3-201ENST00000336798 HHLA3Q9XRX5 114 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 WDR81Q562E7 1941 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 NDUFB1O75438 58 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 RSPO1Q2MKA7 263 aaPredicted RBP9.82□□□□□ -0.84
SDC3-201ENST00000336798 MUSTN1Q8IVN3 82 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 RNF138Q8WVD3 245 aa9.82□□□□□ -0.84
SDC3-201ENST00000336798 C1orf147Q96MC9 270 aaPredicted RBP9.82□□□□□ -0.84
SDC3-201ENST00000336798 H3BUA1 57 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 RPL39P62891 51 aaKnown RBP9.81□□□□□ -0.84
SDC3-201ENST00000336798 ROS1P08922 2347 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 A0A0J9YXV3 536 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 WNK2Q9Y3S1 2297 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 NUPR1O60356 82 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 HELZP42694 1942 aaKnown RBP9.81□□□□□ -0.84
SDC3-201ENST00000336798 PKDREJQ9NTG1 2253 aa9.81□□□□□ -0.84
SDC3-201ENST00000336798 IGHV7-81A0A0B4J1V7 117 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 H0Y9J4 135 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 M0QXV9 152 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 KLK12Q9UKR0 248 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 ATOX1O00244 68 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 IGKV2-24A0A0C4DH68 120 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 MT-ATP8P03928 68 aa9.8□□□□□ -0.84
SDC3-201ENST00000336798 VWA8A3KMH1 1905 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 NREPQ16612 68 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 HEATR5AQ86XA9 2040 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 Q8N1Y9 231 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 PSMB8P28062 276 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 PLXND1Q9Y4D7 1925 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 ACACAQ13085 2346 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 NDUFV3P56181 108 aaKnown RBP9.79□□□□□ -0.84
SDC3-201ENST00000336798 LINC00173Q6ZV60 143 aa9.79□□□□□ -0.84
SDC3-201ENST00000336798 A0A096LNI7 61 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 MP68P56378 58 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 ZNF407Q9C0G0 2248 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms