RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 GCSHP23434 173 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 BLCAPP62952 87 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 ZFAND2AQ8N6M9 145 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 LINC00477Q96M19 166 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 CHAC1Q9BUX1 264 aa12.17□□□□□ -0.46
USHBP1-202ENST00000324554 TRBV25-1A0A075B6N4 114 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 DEFB1P60022 68 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 Q6ZS46 218 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 HIGD1BQ9P298 99 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 CCDC168Q8NDH2 2452 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 A0A1W2PPM0 123 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 OR10J6PQ8NGY7 276 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 SMPXQ9UHP9 88 aa12.16□□□□□ -0.46
USHBP1-202ENST00000324554 A0A096LNT2 108 aa12.15□□□□□ -0.46
USHBP1-202ENST00000324554 OVOL1O14753 267 aa12.15□□□□□ -0.46
USHBP1-202ENST00000324554 PF4V1P10720 104 aa12.15□□□□□ -0.46
USHBP1-202ENST00000324554 DSCR9P59020 149 aa12.15□□□□□ -0.46
USHBP1-202ENST00000324554 LCNL1Q6ZST4 164 aa12.15□□□□□ -0.46
USHBP1-202ENST00000324554 SLC25A16P16260 332 aa12.15□□□□□ -0.47
USHBP1-202ENST00000324554 DEFB113Q30KQ7 82 aa12.15□□□□□ -0.47
USHBP1-202ENST00000324554 PSMG4Q5JS54 123 aa12.15□□□□□ -0.47
USHBP1-202ENST00000324554 MYOZ3Q8TDC0 251 aa12.15□□□□□ -0.47
USHBP1-202ENST00000324554 Q5PR19 223 aa12.14□□□□□ -0.47
USHBP1-202ENST00000324554 TRAV21A0A0B4J279 112 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 J3QKU1 62 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 K7ERJ3 54 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 K7ERU9 68 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 RPL11P62913 178 aaKnown RBP12.13□□□□□ -0.47
USHBP1-202ENST00000324554 MAPKAPK5-AS1Q8N8E1 139 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 K7EMI3 77 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 IGLV1-40P01703 118 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 SMIM13P0DJ93 91 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 SPCS1Q9Y6A9 102 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 MXRA5Q9NR99 2828 aa12.13□□□□□ -0.47
USHBP1-202ENST00000324554 TLN2Q9Y4G6 2542 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 A0A087WX48 190 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 F6UB75 175 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 M0R381 172 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 LINC01356Q8N9X3 169 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 FAM19A4Q96LR4 140 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 Q96MF0 132 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 SMIM2Q9BVW6 85 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 MRAP2Q96G30 205 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 RHPN1-AS1Q9BWJ2 59 aa12.12□□□□□ -0.47
USHBP1-202ENST00000324554 IGKV3-7A0A075B6H7 116 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 SAMD5Q5TGI4 173 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 GCN1Q92616 2671 aaKnown RBP12.11□□□□□ -0.47
USHBP1-202ENST00000324554 CFHR3Q02985 330 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 ANXA2RQ3ZCQ2 193 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 PHLDA1Q8WV24 401 aaPredicted RBP12.11□□□□□ -0.47
USHBP1-202ENST00000324554 RASL10AQ92737 203 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 CR1P17927 2039 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 ITPR2Q14571 2701 aa12.11□□□□□ -0.47
USHBP1-202ENST00000324554 DAZ1Q9NQZ3 744 aaKnown RBP12.1□□□□□ -0.47
USHBP1-202ENST00000324554 HLA-DRB4P13762 266 aa12.1□□□□□ -0.47
USHBP1-202ENST00000324554 S100A4P26447 101 aaKnown RBP12.1□□□□□ -0.47
USHBP1-202ENST00000324554 ASIPP42127 132 aa12.1□□□□□ -0.47
USHBP1-202ENST00000324554 APRG1Q8IVJ8 170 aa12.1□□□□□ -0.47
USHBP1-202ENST00000324554 CEND1Q8N111 149 aa12.1□□□□□ -0.47
USHBP1-202ENST00000324554 RPL39LQ96EH5 51 aaKnown RBP12.1□□□□□ -0.47
USHBP1-202ENST00000324554 HLA-DRB4X5D2U9 266 aa12.1□□□□□ -0.47
USHBP1-202ENST00000324554 CREBBPQ92793 2442 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.09□□□□□ -0.47
USHBP1-202ENST00000324554 FABP2P12104 132 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 RNASE4P34096 147 aaKnown RBP12.09□□□□□ -0.47
USHBP1-202ENST00000324554 C14orf178Q8N769 122 aaPredicted RBP12.09□□□□□ -0.47
USHBP1-202ENST00000324554 TM2D2Q9BX73 214 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 NHP2Q9NX24 153 aaKnown RBP12.09□□□□□ -0.47
USHBP1-202ENST00000324554 OR5A1Q8NGJ0 315 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 PHLDA3Q9Y5J5 127 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 AGRNO00468 2067 aa12.09□□□□□ -0.47
USHBP1-202ENST00000324554 EDN2P20800 178 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 SUMO2P61956 95 aaKnown RBP12.08□□□□□ -0.48
USHBP1-202ENST00000324554 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 ITPR3Q14573 2671 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 IGHV4-31P0DP07 118 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 PLNP26678 52 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 DEFB112Q30KQ8 113 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 TMEM95Q3KNT9 176 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 DPH3P1Q9H4G8 78 aa12.08□□□□□ -0.48
USHBP1-202ENST00000324554 TRBV7-9A0A0J9YWB2 115 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 MED14OSP0DP75 135 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 SRD5A1P18405 259 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 F8VRH5 84 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 GNRH2O43555 120 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 KRTAP1-3Q8IUG1 177 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 WFDC11Q8NEX6 87 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 TOMM6Q96B49 74 aa12.07□□□□□ -0.48
USHBP1-202ENST00000324554 BEX4Q9NWD9 120 aaPredicted RBP12.07□□□□□ -0.48
USHBP1-202ENST00000324554 TRAV12-1A0A0B4J245 112 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 H7C1H1 209 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 IGHV4-59P01825 116 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 RNASE3P12724 160 aaKnown RBP12.06□□□□□ -0.48
USHBP1-202ENST00000324554 COTL1Q14019 142 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 SCGB3A1Q96QR1 104 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 SONP18583 2426 aaKnown RBP12.06□□□□□ -0.48
USHBP1-202ENST00000324554 G3V4G9 280 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 ORMDL2Q53FV1 153 aa12.06□□□□□ -0.48
USHBP1-202ENST00000324554 PDZD2O15018 2839 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 MGPP08493 103 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms