RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 NUP210LQ5VU65 1888 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 CFHR4Q92496 578 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 RNF183Q96D59 192 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 ZFP36L1Q07352 338 aaKnown RBP6.3□□□□□ -1.4
CIITA-201ENST00000324288 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.3□□□□□ -1.4
CIITA-201ENST00000324288 IGKV1-6A0A0C4DH72 117 aa6.3□□□□□ -1.4
CIITA-201ENST00000324288 IGKV2-29A2NJV5 120 aaPredicted RBP6.3□□□□□ -1.4
CIITA-201ENST00000324288 DUX4L9Q6RFH8 374 aaPredicted RBP6.29□□□□□ -1.4
CIITA-201ENST00000324288 DAND5Q8N907 189 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 BRK1Q8WUW1 75 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 U3KQE9 123 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 IGLV3-19P01714 112 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 LGALS9BQ3B8N2 356 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 LGALS9CQ6DKI2 356 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 CHKB-CPT1BH3BT56 60 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 DEFB136Q30KP8 78 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 ANKRD39Q53RE8 183 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 GFRA4Q9GZZ7 299 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 IGKV2D-24A0A075B6R9 120 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 A0A0B4J2C4 111 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 DKK4Q9UBT3 224 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 FOXE3Q13461 319 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 LYPD6Q86Y78 171 aa6.29□□□□□ -1.4
CIITA-201ENST00000324288 RPL39LQ96EH5 51 aaKnown RBP6.29□□□□□ -1.4
CIITA-201ENST00000324288 NOP10Q9NPE3 64 aaKnown RBP6.28□□□□□ -1.4
CIITA-201ENST00000324288 UBE2E1P51965 193 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 PTH2Q96A98 100 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 ZNF493Q6ZR52 646 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 SDHAF1A6NFY7 115 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 SMIM2Q9BVW6 85 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 RHODO00212 210 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 Q9H8V8 135 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 ACYP1P07311 99 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 MPLKIPQ8TAP9 179 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 IGHV1OR15-1A0A075B7D0 117 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 TPSG1Q9NRR2 321 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 FAM120AOSQ5T036 256 aa6.28□□□□□ -1.4
CIITA-201ENST00000324288 DEFB125Q8N687 156 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 ORMDL1Q9P0S3 153 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 IGHV2-70DA0A0C4DH43 119 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 MSMBP08118 114 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 RBAKDNA6NC62 111 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 KIR2DL5BA0A0G2JN68 375 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 KIR2DL5BA0A0G2JPC4 375 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 CSRP1P21291 193 aaKnown RBP6.27□□□□□ -1.41
CIITA-201ENST00000324288 KIR2DL5AQ8N109 375 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 FXYD2P54710 66 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 TIMM17AQ99595 171 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 TRAV4A0A0B4J268 109 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 PSMB8P28062 276 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 SP5Q6BEB4 398 aaPredicted RBP6.27□□□□□ -1.41
CIITA-201ENST00000324288 IGLV10-54A0A075B6I4 117 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 CLEC2BQ92478 149 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 LRP4O75096 1905 aa6.27□□□□□ -1.41
CIITA-201ENST00000324288 GNRH2O43555 120 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 C17orf77Q96MU5 243 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 YPEL3P61236 119 aaPredicted RBP6.26□□□□□ -1.41
CIITA-201ENST00000324288 HERV-K104P63124 156 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 ICOSQ9Y6W8 199 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 TRBV19A0A075B6N1 114 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 FXYD5Q96DB9 178 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 F6UB75 175 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 C5orf38Q86SI9 138 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 C14orf132Q9NPU4 83 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 TMEM14BQ9NUH8 114 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 PRRC2CQ9Y520 2896 aaKnown RBP6.26□□□□□ -1.41
CIITA-201ENST00000324288 G3V4G9 280 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 TAX1BP3O14907 124 aa6.26□□□□□ -1.41
CIITA-201ENST00000324288 LYPD1Q8N2G4 141 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 PKIGQ9Y2B9 76 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 MUSTN1Q8IVN3 82 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 OOSP1A8MZH6 123 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV1-69DA0A0B4J2H0 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 ATOX1O00244 68 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV1-69P01742 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 MP68P56378 58 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 C8orf31Q8N9H6 132 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 ESM1Q9NQ30 184 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 TRBV6-6A0A0A6YYG2 114 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 NCR3O14931 201 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 APOC4P55056 127 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 TTTY13Q9BZ97 58 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 WISP1O95388 367 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV3-30P01768 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV3-33P01772 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV3-30-3P0DP02 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 IGHV3-30-5P0DP03 117 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 RNF5Q99942 180 aa6.25□□□□□ -1.41
CIITA-201ENST00000324288 PTPRSQ13332 1948 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 RAI1Q7Z5J4 1906 aaPredicted RBP6.24□□□□□ -1.41
CIITA-201ENST00000324288 TRAV23DV6A0A075B6W5 121 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 ZNF747Q9BV97 191 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 CRYGBP07316 175 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 ZNF134P52741 427 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 TMEM61Q8N0U2 210 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 B3GALT5-AS1P59052 145 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 VOPP1Q96AW1 172 aa6.24□□□□□ -1.41
CIITA-201ENST00000324288 DIAPH2-AS1Q14236 149 aa6.23□□□□□ -1.41
CIITA-201ENST00000324288 MT-ATP8P03928 68 aa6.23□□□□□ -1.41
CIITA-201ENST00000324288 PDE6HQ13956 83 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms