RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 P01737 135 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 COX19Q49B96 90 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 OR11H2Q8NH07 326 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 ODF3Q96PU9 254 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 C1QTNF4Q9BXJ3 329 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 DNAH9Q9NYC9 4486 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 MT-ND6P03923 174 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 FABP4P15090 132 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 CRIP1P50238 77 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 Q6ZWC4 215 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 OR10D4PQ8NGN7 298 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 RNF183Q96D59 192 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 DAZAP1Q96EP5 407 aaKnown RBP13.17□□□□□ -0.3
HMGA1-201ENST00000311487 HIST1H2BLQ99880 126 aa13.17□□□□□ -0.3
HMGA1-201ENST00000311487 HIGD1CA8MV81 97 aa13.16□□□□□ -0.3
HMGA1-201ENST00000311487 ZNF324O75467 553 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-201ENST00000311487 SAPCD1Q5SSQ6 148 aa13.16□□□□□ -0.3
HMGA1-201ENST00000311487 TP53TG3Q9ULZ0 132 aa13.16□□□□□ -0.3
HMGA1-201ENST00000311487 HUWE1Q7Z6Z7 4374 aaKnown RBP13.16□□□□□ -0.3
HMGA1-201ENST00000311487 AZU1P20160 251 aa13.15□□□□□ -0.3
HMGA1-201ENST00000311487 TM2D3Q9BRN9 247 aa13.15□□□□□ -0.3
HMGA1-201ENST00000311487 A8MWL6 223 aa13.15□□□□□ -0.3
HMGA1-201ENST00000311487 EMP1P54849 157 aa13.15□□□□□ -0.3
HMGA1-201ENST00000311487 RASL11AQ6T310 242 aa13.15□□□□□ -0.3
HMGA1-201ENST00000311487 AMBPP02760 352 aa13.14□□□□□ -0.31
HMGA1-201ENST00000311487 GTSF1Q8WW33 167 aa13.14□□□□□ -0.31
HMGA1-201ENST00000311487 C11orf21Q9P2W6 132 aa13.14□□□□□ -0.31
HMGA1-201ENST00000311487 GOLT1BQ9Y3E0 138 aa13.14□□□□□ -0.31
HMGA1-201ENST00000311487 LENEPQ9Y5L5 61 aa13.14□□□□□ -0.31
HMGA1-201ENST00000311487 GRIFINA4D1Z8 144 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 HLA-DQA1P01909 254 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 ZNF705AQ6ZN79 300 aaPredicted RBP13.13□□□□□ -0.31
HMGA1-201ENST00000311487 SPATA25Q9BR10 227 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 X6R8D5 127 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 TCAPO15273 167 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 PYY3Q5JQD4 70 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 PACRGQ96M98 296 aaPredicted RBP13.13□□□□□ -0.31
HMGA1-201ENST00000311487 GFRA4Q9GZZ7 299 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 ZMAT4Q9H898 229 aa13.13□□□□□ -0.31
HMGA1-201ENST00000311487 TMSB15BA0A087X1C1 80 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 A0A1B0GXF2 115 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 SH2D1AO60880 128 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 ATP5L2Q7Z4Y8 100 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 TMEM256Q8N2U0 113 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 OR2D3Q8NGH3 330 aa13.12□□□□□ -0.31
HMGA1-201ENST00000311487 TRBV7-9A0A0J9YWB2 115 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 FBLL1A6NHQ2 334 aaKnown RBP13.11□□□□□ -0.31
HMGA1-201ENST00000311487 GNRH2O43555 120 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 Q6AWC8 147 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 FAM231BA6NCW3 169 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 PKIAP61925 76 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 ANXA2RQ3ZCQ2 193 aa13.11□□□□□ -0.31
HMGA1-201ENST00000311487 TRAV21A0A0B4J279 112 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 CBY3A6NI87 242 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 NUPR1O60356 82 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 ORM1P02763 201 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 PCP4P48539 62 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 KIAA1644Q3SXP7 199 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 FAM162BQ5T6X4 162 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 COX8CQ7Z4L0 72 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 STAB2Q8WWQ8 2551 aa13.1□□□□□ -0.31
HMGA1-201ENST00000311487 IGHV4-28A0A0C4DH34 117 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 TSTD3H0UI37 97 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 APCSP02743 223 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 GZMBP10144 247 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 DDTP30046 118 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 LINC00310P59036 64 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 SLAQ13239 276 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 PGLYRP4Q96LB8 373 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 FABP5P3A8MUU1 101 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 Q0VG73 95 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 FAM159AQ6UWV7 190 aa13.09□□□□□ -0.31
HMGA1-201ENST00000311487 TIMM8BQ9Y5J9 83 aaPredicted RBP13.09□□□□□ -0.31
HMGA1-201ENST00000311487 IGHV1OR15-1A0A075B7D0 117 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 IGKV3D-20A0A0C4DH25 116 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 C21orf62-AS1Q17RA5 79 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 RRN3P1Q2M238 152 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 TMEM18Q96B42 140 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 MDFICQ9P1T7 246 aa13.08□□□□□ -0.32
HMGA1-201ENST00000311487 A0A0J9YWU9 116 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 F2Z2F3 143 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 CAMPP49913 170 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 HBBP68871 147 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 Q8NAQ8 132 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 TP53TG1Q9Y2A0 90 aa13.07□□□□□ -0.32
HMGA1-201ENST00000311487 FOXA3P55318 350 aaPredicted RBP13.07□□□□□ -0.32
HMGA1-201ENST00000311487 SRIP30626 198 aa13.06□□□□□ -0.32
HMGA1-201ENST00000311487 CDPF1Q6NVV7 123 aa13.06□□□□□ -0.32
HMGA1-201ENST00000311487 SSBP4Q9BWG4 385 aaPredicted RBP13.06□□□□□ -0.32
HMGA1-201ENST00000311487 SERF1AO75920 110 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 ESDP10768 282 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 OR10J3Q5JRS4 329 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 BAGE3Q86Y29 109 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 ZNF575Q86XF7 245 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 C20orf144Q9BQM9 153 aa13.05□□□□□ -0.32
HMGA1-201ENST00000311487 MUC21A0A0G2JKD1 596 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 MUC21A0A140T8X8 626 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 PLAC8L1A1L4L8 177 aa13.03□□□□□ -0.32
HMGA1-201ENST00000311487 NHLRC4P0CG21 123 aaPredicted RBP13.03□□□□□ -0.32
HMGA1-201ENST00000311487 RNASE8Q8TDE3 154 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms