RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 VMO1Q7Z5L0 202 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 NDUFB8O95169 186 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 COX6B1P14854 86 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 Q6ZR03 302 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 SPRY2O43597 315 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 TRBV12-3P01733 135 aa9.35□□□□□ -0.91
SHROOM3-201ENST00000296043 NREPQ16612 68 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 F8P00451 2351 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 XCL1P47992 114 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 LINC00643Q86TS7 51 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 PSCAO43653 123 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 VOPP1Q96AW1 172 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 C20orf173Q96LM9 149 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 FANCD2OSQ96PS1 177 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 PRR25Q96S07 402 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 MDS2Q8NDY4 140 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 Q9HAA7 133 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 FOXE3Q13461 319 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 Q6ZS49 121 aa9.34□□□□□ -0.91
SHROOM3-201ENST00000296043 DEFB123Q8N688 67 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 RHOHQ15669 191 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 IGHV4OR15-8A0A075B7B6 117 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 A0A087WW49 117 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 CFPP27918 469 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 FAM110AQ9BQ89 295 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 RHPN1-AS1Q9BWJ2 59 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 ACANP16112 2415 aa9.33□□□□□ -0.92
SHROOM3-201ENST00000296043 PLA2G2EQ9NZK7 142 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 SNURFQ9Y675 71 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 TIMM17BO60830 172 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 IGKV1-39P01597 117 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 IGKV1D-39P04432 117 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 SND1-IT1Q9HBX3 110 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 GAFA1Q96PS6 74 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 THSD7AQ9UPZ6 1657 aa9.32□□□□□ -0.92
SHROOM3-201ENST00000296043 FRMD6-AS1P0C7T7 363 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 ZNF134P52741 427 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 IGKV2D-26A0A0A0MRZ7 120 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 SRRM5B3KS81 715 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 IGHV1-18A0A0C4DH31 117 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 H3BT86 120 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 LECT2O14960 151 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 A6NED7 52 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 ZNRF2Q8NHG8 242 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 NOTCH2Q04721 2471 aa9.31□□□□□ -0.92
SHROOM3-201ENST00000296043 NDUFA11Q86Y39 141 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 SMIM9A6NGZ8 99 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 COL5A3P25940 1745 aaPredicted RBP9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 IGKV1D-17A0A075B6S4 117 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 WI2-2373I1.2A0A1W2PRP0 233 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 CSDC2Q9Y534 153 aaKnown RBP9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 E9PLN8 166 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 NDUFA4L2Q9NRX3 87 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 TMEM14CQ9P0S9 112 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 XCL2Q9UBD3 114 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 PINLYPA6NC86 204 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 BUB1B-PAK6H3BSN5 160 aa9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 MRPL14Q6P1L8 145 aaKnown RBP9.3□□□□□ -0.92
SHROOM3-201ENST00000296043 H3BRN7 92 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 PIP4P2Q8N4L2 257 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 OPRPNQ99935 248 aaPredicted RBP9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 COL4A1P02462 1669 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 NCR3O14931 201 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 COLQQ9Y215 455 aaPredicted RBP9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 SPRR3Q9UBC9 169 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 ENHOQ6UWT2 76 aa9.29□□□□□ -0.92
SHROOM3-201ENST00000296043 ELANEP08246 267 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 IGLV3-32A0A0A0MS00 114 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 PRSS22Q9GZN4 317 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 ODF1Q14990 250 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 C17orf77Q96MU5 243 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 CSRP2Q16527 193 aa9.28□□□□□ -0.92
SHROOM3-201ENST00000296043 H0YGX0 51 aa9.27□□□□□ -0.92
SHROOM3-201ENST00000296043 GNRH2O43555 120 aa9.27□□□□□ -0.92
SHROOM3-201ENST00000296043 NHSL1Q5SYE7 1610 aa9.27□□□□□ -0.92
SHROOM3-201ENST00000296043 ZFYVE26Q68DK2 2539 aa9.27□□□□□ -0.92
SHROOM3-201ENST00000296043 DAZ1Q9NQZ3 744 aaKnown RBP9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 FAM223BA6NKX1 122 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 FAM223AQ8IWN6 122 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 OVOL3O00110 214 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 HIST2H2BCQ6DN03 193 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 HIST2H2BDQ6DRA6 164 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 Q71RC1 249 aaPredicted RBP9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 E9PLD3 99 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 OOSP1A8MZH6 123 aa9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 RPL39P62891 51 aaKnown RBP9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 FN1P02751 2386 aaKnown RBP9.27□□□□□ -0.93
SHROOM3-201ENST00000296043 DEFB131AP59861 70 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 LRRC75A-AS1Q8N1F1 130 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 GGNQ86UU5 652 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 IGF2BP2-AS1Q96M15 143 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 PRR19A6NJB7 356 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 A0A096LPF7 62 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 USMG5Q96IX5 58 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 GTSF1Q8WW33 167 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 TMEM178BH3BS89 294 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 SCXQ7RTU7 201 aa9.26□□□□□ -0.93
SHROOM3-201ENST00000296043 ETV2O00321 342 aaPredicted RBP9.25□□□□□ -0.93
SHROOM3-201ENST00000296043 ANGP03950 147 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-201ENST00000296043 MSRB1Q9NZV6 116 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms