RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 C9orf139Q6ZV77 190 aa12.64□□□□□ -0.39
CTCF-201ENST00000264010 TNFRSF6BO95407 300 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 CTRLP40313 264 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 PIP4P2Q8N4L2 257 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 TMEM213A2RRL7 107 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 M0R381 172 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 SHISA2Q6UWI4 295 aa12.63□□□□□ -0.39
CTCF-201ENST00000264010 NPIPB6E9PJ23 425 aa12.62□□□□□ -0.39
CTCF-201ENST00000264010 BUB3O43684 328 aa12.62□□□□□ -0.39
CTCF-201ENST00000264010 SLC25A16P16260 332 aa12.62□□□□□ -0.39
CTCF-201ENST00000264010 FAM104BQ5XKR9 115 aa12.62□□□□□ -0.39
CTCF-201ENST00000264010 IGLV2-11P01706 119 aa12.61□□□□□ -0.39
CTCF-201ENST00000264010 PPDPFLQ8WWR9 84 aa12.61□□□□□ -0.39
CTCF-201ENST00000264010 OVOL1O14753 267 aa12.61□□□□□ -0.39
CTCF-201ENST00000264010 GATA3P23771 443 aa12.61□□□□□ -0.39
CTCF-201ENST00000264010 KHDC1LQ5JSQ8 128 aa12.61□□□□□ -0.39
CTCF-201ENST00000264010 FAM208BQ5VWN6 2430 aa12.6□□□□□ -0.39
CTCF-201ENST00000264010 ATP5LO75964 103 aa12.6□□□□□ -0.39
CTCF-201ENST00000264010 IGHV4-30-2A0A087WSY4 118 aa12.6□□□□□ -0.39
CTCF-201ENST00000264010 EGR2P11161 476 aaPredicted RBP12.6□□□□□ -0.39
CTCF-201ENST00000264010 VCX2Q9H322 139 aa12.6□□□□□ -0.39
CTCF-201ENST00000264010 INSL3P51460 131 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 SCRT2Q9NQ03 307 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 PHLDA3Q9Y5J5 127 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 OVOL3O00110 214 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 IGHV4-38-2P0DP08 117 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 IL17RELQ6ZVW7 336 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 NDUFA4O00483 81 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 TMEM158Q8WZ71 300 aa12.59□□□□□ -0.39
CTCF-201ENST00000264010 LINC01548A6NM66 108 aa12.58□□□□□ -0.39
CTCF-201ENST00000264010 ZZEF1O43149 2961 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 RBAKDNA6NC62 111 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 LINC01356Q8N9X3 169 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 OR13C6PQ8NH95 151 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 C12orf74Q32Q52 190 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 LINC00477Q96M19 166 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 C1orf43Q9BWL3 253 aa12.58□□□□□ -0.4
CTCF-201ENST00000264010 TRAV21A0A0B4J279 112 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 H3BUA1 57 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 FAM74A4Q5TZK3 123 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 C2orf70A6NJV1 201 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 MRPL53Q96EL3 112 aaKnown RBP12.57□□□□□ -0.4
CTCF-201ENST00000264010 ZNF747Q9BV97 191 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 NXT2Q9NPJ8 142 aaKnown RBP12.57□□□□□ -0.4
CTCF-201ENST00000264010 MRPS12O15235 138 aaKnown RBP12.57□□□□□ -0.4
CTCF-201ENST00000264010 ASIPP42127 132 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 C15orf53Q8NAA6 179 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 CCDC140Q96MF4 163 aa12.57□□□□□ -0.4
CTCF-201ENST00000264010 SONP18583 2426 aaKnown RBP12.57□□□□□ -0.4
CTCF-201ENST00000264010 VWC2LB2RUY7 222 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 MRPL51Q4U2R6 128 aaKnown RBP12.56□□□□□ -0.4
CTCF-201ENST00000264010 C2orf82Q6UX34 121 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 AGPAT4-IT1Q9H0P7 198 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 NTN5Q8WTR8 489 aaPredicted RBP12.56□□□□□ -0.4
CTCF-201ENST00000264010 HLA-DRB4P13762 266 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 DGAT2L7PQ6IED9 249 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 FAM159AQ6UWV7 190 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 HLA-DRB4X5D2U9 266 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 IGLL5B9A064 214 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 ERG28Q9UKR5 140 aa12.56□□□□□ -0.4
CTCF-201ENST00000264010 F8W735 103 aaPredicted RBP12.55□□□□□ -0.4
CTCF-201ENST00000264010 FOXI2Q6ZQN5 318 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 RHPN1-AS1Q9BWJ2 59 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 ASH1LQ9NR48 2969 aaKnown RBP12.55□□□□□ -0.4
CTCF-201ENST00000264010 PRAC2D3DTV9 90 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 RNASE4P34096 147 aaKnown RBP12.55□□□□□ -0.4
CTCF-201ENST00000264010 CRIP1P50238 77 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 PMVKQ15126 192 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 CITED2Q99967 270 aaPredicted RBP12.55□□□□□ -0.4
CTCF-201ENST00000264010 SIGLEC8Q9NYZ4 499 aa12.55□□□□□ -0.4
CTCF-201ENST00000264010 ZNF688P0C7X2 276 aa12.54□□□□□ -0.4
CTCF-201ENST00000264010 ZFAND3Q9H8U3 227 aa12.54□□□□□ -0.4
CTCF-201ENST00000264010 TRBV25-1A0A075B6N4 114 aa12.54□□□□□ -0.4
CTCF-201ENST00000264010 IGKV3D-20A0A0C4DH25 116 aa12.54□□□□□ -0.4
CTCF-201ENST00000264010 SMAD5-AS1Q9Y6J3 95 aa12.54□□□□□ -0.4
CTCF-201ENST00000264010 DAZ1Q9NQZ3 744 aaKnown RBP12.54□□□□□ -0.4
CTCF-201ENST00000264010 SNRPD3P62318 126 aaKnown RBP12.53□□□□□ -0.4
CTCF-201ENST00000264010 CEND1Q8N111 149 aa12.53□□□□□ -0.4
CTCF-201ENST00000264010 TRAV8-3A0A0A6YYJ7 113 aa12.53□□□□□ -0.4
CTCF-201ENST00000264010 FOXI1Q12951 378 aa12.53□□□□□ -0.4
CTCF-201ENST00000264010 MRPL35Q9NZE8 188 aaKnown RBP12.53□□□□□ -0.4
CTCF-201ENST00000264010 BLCAPP62952 87 aa12.52□□□□□ -0.4
CTCF-201ENST00000264010 KIR2DL4Q99706 377 aa12.52□□□□□ -0.4
CTCF-201ENST00000264010 IGHG2P01859 326 aa12.52□□□□□ -0.41
CTCF-201ENST00000264010 SRD5A1P18405 259 aa12.52□□□□□ -0.41
CTCF-201ENST00000264010 CSPG4Q6UVK1 2322 aa12.51□□□□□ -0.41
CTCF-201ENST00000264010 A6NDX4 124 aa12.51□□□□□ -0.41
CTCF-201ENST00000264010 ZNF493Q6ZR52 646 aa12.51□□□□□ -0.41
CTCF-201ENST00000264010 Q6ZUT4 128 aa12.51□□□□□ -0.41
CTCF-201ENST00000264010 J3QLI3 93 aa12.5□□□□□ -0.41
CTCF-201ENST00000264010 RPL32P62910 135 aaKnown RBP12.5□□□□□ -0.41
CTCF-201ENST00000264010 LINC01559Q495D7 138 aa12.5□□□□□ -0.41
CTCF-201ENST00000264010 ZNF80P51504 273 aaPredicted RBP12.5□□□□□ -0.41
CTCF-201ENST00000264010 NPYP01303 97 aa12.5□□□□□ -0.41
CTCF-201ENST00000264010 GAGE2AQ6NT46 116 aa12.5□□□□□ -0.41
CTCF-201ENST00000264010 LENEPQ9Y5L5 61 aa12.5□□□□□ -0.41
CTCF-201ENST00000264010 SLC25A20O43772 301 aa12.49□□□□□ -0.41
CTCF-201ENST00000264010 SRSF2Q01130 221 aaKnown RBP12.49□□□□□ -0.41
CTCF-201ENST00000264010 RRN3P1Q2M238 152 aa12.49□□□□□ -0.41
CTCF-201ENST00000264010 IGF1P05019 195 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms