RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 EBI3Q14213 229 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 BRD3OSQ6XYD6 125 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 Q8N8P6 123 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 CCL19Q99731 98 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 CNFNQ9BYD5 112 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 CYSLTR1Q9Y271 337 aa7.67□□□□□ -1.18
LIG3-201ENST00000262327 PLA2G2AP14555 144 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 MINOS1Q5TGZ0 78 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 NRACQ8N912 160 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 MYOZ3Q8TDC0 251 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 MINOS1-NBL1R4GNA1 71 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 F8W1H4 67 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 SRD5A1P18405 259 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 UNQ9165/PRO28630Q6UXU0 137 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 RPL39LQ96EH5 51 aaKnown RBP7.66□□□□□ -1.18
LIG3-201ENST00000262327 DOPEY1Q5JWR5 2465 aa7.66□□□□□ -1.18
LIG3-201ENST00000262327 J3QKU1 62 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 LAGE3Q14657 143 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 C14orf178Q8N769 122 aaPredicted RBP7.65□□□□□ -1.18
LIG3-201ENST00000262327 C1QTNF4Q9BXJ3 329 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 CDIP1Q9H305 208 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 CSMD2Q7Z408 3487 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 MGPP08493 103 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 LY6EQ16553 131 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 SYT8Q8NBV8 401 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 EEF1AKMT3Q96AZ1 226 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 SLC50A1Q9BRV3 221 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 ZMAT4Q9H898 229 aa7.65□□□□□ -1.18
LIG3-201ENST00000262327 EPG5Q9HCE0 2579 aa7.65□□□□□ -1.19
LIG3-201ENST00000262327 AMTNQ6UX39 209 aa7.65□□□□□ -1.19
LIG3-201ENST00000262327 YAE1D1Q9NRH1 226 aa7.65□□□□□ -1.19
LIG3-201ENST00000262327 CENPVL3A0A0U1RRI6 287 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 H3BMG7 143 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 IGHV4-39P01824 125 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 S100A4P26447 101 aaKnown RBP7.64□□□□□ -1.19
LIG3-201ENST00000262327 ATP5J2P56134 94 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 ANXA2RQ3ZCQ2 193 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 UBE2E1P51965 193 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 EMP1P54849 157 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 XGP55808 180 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 SFTA2Q6UW10 78 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 TM2D2Q9BX73 214 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 ABCA2Q9BZC7 2435 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 KMT2BQ9UMN6 2715 aaPredicted RBP7.64□□□□□ -1.19
LIG3-201ENST00000262327 ZNF462Q96JM2 2506 aa7.64□□□□□ -1.19
LIG3-201ENST00000262327 OOSP1A8MZH6 123 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 GNRH2O43555 120 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 TMEM190Q8WZ59 177 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 PF4V1P10720 104 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 RNASE4P34096 147 aaKnown RBP7.63□□□□□ -1.19
LIG3-201ENST00000262327 Q6ZUT4 128 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 CEND1Q8N111 149 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 HIST1H4GQ99525 98 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 NPFFO15130 113 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 ATP5LO75964 103 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 EDN2P20800 178 aa7.63□□□□□ -1.19
LIG3-201ENST00000262327 SRSF2Q01130 221 aaKnown RBP7.63□□□□□ -1.19
LIG3-201ENST00000262327 ZFYVE26Q68DK2 2539 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 RBAKDNA6NC62 111 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 DSCR9P59020 149 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 C5orf56Q8N8D9 126 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 TRAV41A0A0B4J266 112 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 LMO4P61968 165 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 SCGB3A1Q96QR1 104 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 PIMREGQ9BSJ6 248 aa7.62□□□□□ -1.19
LIG3-201ENST00000262327 A0A087WX48 190 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 LINC01546A6NGU7 62 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 FHL3Q13643 280 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 C9orf47Q6ZRZ4 202 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 PHLDA1Q8WV24 401 aaPredicted RBP7.61□□□□□ -1.19
LIG3-201ENST00000262327 SMIM2Q9BVW6 85 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 UBR5O95071 2799 aaPredicted RBP7.61□□□□□ -1.19
LIG3-201ENST00000262327 Q6ZS46 218 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 GPHB5Q86YW7 130 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 C10orf105Q8TEF2 133 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 RASL10AQ92737 203 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 JPT2Q9H910 190 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 PHLDA3Q9Y5J5 127 aa7.61□□□□□ -1.19
LIG3-201ENST00000262327 USP9YO00507 2555 aaPredicted RBP7.61□□□□□ -1.19
LIG3-201ENST00000262327 TRBV7-1A0A0A6YYK4 115 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 A0A1B0GWB2 263 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 APOMO95445 188 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 NHLRC4P0CG21 123 aaPredicted RBP7.6□□□□□ -1.19
LIG3-201ENST00000262327 GAGE13Q4V321 117 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 CENPEQ02224 2701 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 UTP20O75691 2785 aaKnown RBP7.6□□□□□ -1.19
LIG3-201ENST00000262327 PRSS29PA6NIE9 313 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 ZFAND2AQ8N6M9 145 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 RAX2Q96IS3 184 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 HIGD1BQ9P298 99 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 IGLL5B9A064 214 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 SUMO2P61956 95 aaKnown RBP7.6□□□□□ -1.19
LIG3-201ENST00000262327 FOXI1Q12951 378 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 C12orf74Q32Q52 190 aa7.6□□□□□ -1.19
LIG3-201ENST00000262327 POLQO75417 2590 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 KLHL30-AS1Q8NEE0 82 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 MUC4Q99102 2169 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 E9PLD3 99 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 CCDC179H3BU77 68 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 M0QXV9 152 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms