RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 IGKV3-7A0A075B6H7 116 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 F6UB75 175 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 C14orf178Q8N769 122 aaPredicted RBP12.4□□□□□ -0.42
HOXD3-201ENST00000249440 RAB37Q96AX2 223 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 CHAC1Q9BUX1 264 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 TRBV25-1A0A075B6N4 114 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 IGHV4-30-2A0A087WSY4 118 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 TM4SF20Q53R12 229 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 OCIAD2Q56VL3 154 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 RASL10AQ92737 203 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 ABCA12Q86UK0 2595 aa12.4□□□□□ -0.42
HOXD3-201ENST00000249440 TRAV12-1A0A0B4J245 112 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 SLC25A16P16260 332 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 GCSHP23434 173 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 PCP4P48539 62 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 UFSP1Q6NVU6 142 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 Q6ZS46 218 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 SMIM13P0DJ93 91 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 JMJD8Q96S16 334 aa12.39□□□□□ -0.43
HOXD3-201ENST00000249440 FASNP49327 2511 aaKnown RBP12.38□□□□□ -0.43
HOXD3-201ENST00000249440 H7C1H1 209 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 SPRY2O43597 315 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 LCNL1Q6ZST4 164 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 TOMM6Q96B49 74 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 K7EP34 96 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 GNRH2O43555 120 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 PPP1R17O96001 155 aa12.38□□□□□ -0.43
HOXD3-201ENST00000249440 F8VRH5 84 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 MGPP08493 103 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 RNASE3P12724 160 aaKnown RBP12.37□□□□□ -0.43
HOXD3-201ENST00000249440 RNF151Q2KHN1 245 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 SCGB3A1Q96QR1 104 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.37□□□□□ -0.43
HOXD3-201ENST00000249440 A0A1W2PPM0 123 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 K7EMT4 169 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 FXYD2P54710 66 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 RPL39LQ96EH5 51 aaKnown RBP12.37□□□□□ -0.43
HOXD3-201ENST00000249440 SPOCK3Q9BQ16 436 aa12.37□□□□□ -0.43
HOXD3-201ENST00000249440 NAA38Q9BRA0 125 aaKnown RBP12.37□□□□□ -0.43
HOXD3-201ENST00000249440 B4DSR2 109 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 ID1P41134 155 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 CFHR3Q02985 330 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 SAMD13Q5VXD3 122 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 HIST2H2BCQ6DN03 193 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 K7ERU9 68 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 TM2D2Q9BX73 214 aa12.36□□□□□ -0.43
HOXD3-201ENST00000249440 PTPN13Q12923 2485 aa12.35□□□□□ -0.43
HOXD3-201ENST00000249440 CEND1Q8N111 149 aa12.35□□□□□ -0.43
HOXD3-201ENST00000249440 CHTOPQ9Y3Y2 248 aaKnown RBP12.35□□□□□ -0.43
HOXD3-201ENST00000249440 KLLNB2CW77 178 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 SRD5A1P18405 259 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 FAM159AQ6UWV7 190 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 ZNF580Q9UK33 172 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 MUC4Q99102 2169 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 FABP2P12104 132 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 PLA2G2AP14555 144 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 SAMD5Q5TGI4 173 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 C2orf66Q6UXQ4 117 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 NEXN-AS1Q8NBZ9 246 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 OR5A1Q8NGJ0 315 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 SPCS1Q9Y6A9 102 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 APCP25054 2843 aa12.34□□□□□ -0.43
HOXD3-201ENST00000249440 NXPH4O95158 308 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 AVPP01185 164 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 TAL2Q16559 108 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 POM121L12Q8N7R1 296 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 MAPKAPK5-AS1Q8N8E1 139 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 SELENOKQ9Y6D0 94 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 RNF223E7ERA6 249 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 GATA3P23771 443 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 DCANP1Q8TF63 244 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 NRGNQ92686 78 aa12.33□□□□□ -0.44
HOXD3-201ENST00000249440 ZNF469Q96JG9 3925 aaPredicted RBP12.33□□□□□ -0.44
HOXD3-201ENST00000249440 VPS25Q9BRG1 176 aa12.32□□□□□ -0.44
HOXD3-201ENST00000249440 PSMB8P28062 276 aa12.32□□□□□ -0.44
HOXD3-201ENST00000249440 CSTL1Q9H114 145 aa12.32□□□□□ -0.44
HOXD3-201ENST00000249440 CSPG4Q6UVK1 2322 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 NHP2Q9NX24 153 aaKnown RBP12.31□□□□□ -0.44
HOXD3-201ENST00000249440 KIF25-AS1Q9Y6Z4 181 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 IGHV4OR15-8A0A075B7B6 117 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 A0A087WW49 117 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 OR11H12B2RN74 326 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 EDN2P20800 178 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 OR11H1Q8NG94 326 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 OR11H2Q8NH07 326 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 BAALCQ8WXS3 180 aa12.31□□□□□ -0.44
HOXD3-201ENST00000249440 AGRNO00468 2067 aa12.3□□□□□ -0.44
HOXD3-201ENST00000249440 HECTD1Q9ULT8 2610 aa12.3□□□□□ -0.44
HOXD3-201ENST00000249440 C21orf62-AS1Q17RA5 79 aa12.3□□□□□ -0.44
HOXD3-201ENST00000249440 TMEM95Q3KNT9 176 aa12.3□□□□□ -0.44
HOXD3-201ENST00000249440 DSCR9P59020 149 aa12.29□□□□□ -0.44
HOXD3-201ENST00000249440 LINC00315P59091 139 aa12.29□□□□□ -0.44
HOXD3-201ENST00000249440 PHLDA1Q8WV24 401 aaPredicted RBP12.29□□□□□ -0.44
HOXD3-201ENST00000249440 LINC01549A6NIU2 74 aa12.29□□□□□ -0.44
HOXD3-201ENST00000249440 RPL32P62910 135 aaKnown RBP12.29□□□□□ -0.44
HOXD3-201ENST00000249440 MYMXA0A1B0GTQ4 84 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 K7ERJ3 54 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 CD7P09564 240 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 HIST1H4GQ99525 98 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 ITPR2Q14571 2701 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms