RNA–Protein interactions for RNA: ENST00000640640.1

SCARB2-223, Transcript of scavenger receptor class B member 2, human

TSL 5 BASIC

Gene SCARB2, Length 4,608 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCARB2-223	ENST00000640640	SNHG12	Q9BXW3	62 aa		13.74	□□□□□ -0.21
SCARB2-223	ENST00000640640	SPTBN4	Q9H254	2564 aa		13.74	□□□□□ -0.21
SCARB2-223	ENST00000640640	PRB1	P04280	392 aa		13.73	□□□□□ -0.21
SCARB2-223	ENST00000640640	MORN3	Q6PF18	240 aa	Predicted RBP	13.73	□□□□□ -0.21
SCARB2-223	ENST00000640640	ZNF295-AS1	Q8N0V1	137 aa		13.73	□□□□□ -0.21
SCARB2-223	ENST00000640640	CRYGC	P07315	174 aa		13.73	□□□□□ -0.21
SCARB2-223	ENST00000640640	BUB3	O43684	328 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	SMIM2	Q9BVW6	85 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	LENEP	Q9Y5L5	61 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	SORL1	Q92673	2214 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	LRP4	O75096	1905 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	FOXE3	Q13461	319 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	LY6G5B	Q8NDX9	201 aa		13.72	□□□□□ -0.21
SCARB2-223	ENST00000640640	DEFB130B	P0DP73	79 aa		13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	DEFB130A	P0DP74	79 aa		13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	CHAC1	Q9BUX1	264 aa		13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	ERG28	Q9UKR5	140 aa		13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	KIR3DS1	Q14943	382 aa		13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	MRPL53	Q96EL3	112 aa	Known RBP	13.71	□□□□□ -0.21
SCARB2-223	ENST00000640640	USP9X	Q93008	2570 aa	Predicted RBP	13.71	□□□□□ -0.22
SCARB2-223	ENST00000640640	NRGN	Q92686	78 aa		13.71	□□□□□ -0.22
SCARB2-223	ENST00000640640	IGF2BP2-AS1	Q96M15	143 aa		13.71	□□□□□ -0.22
SCARB2-223	ENST00000640640	SPX	Q9BT56	116 aa		13.71	□□□□□ -0.22
SCARB2-223	ENST00000640640	TRAV13-1	A0A0B4J241	112 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	CD5L	O43866	347 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBAKDN	A6NC62	111 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	ATP6V0B	Q99437	205 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	ESD	P10768	282 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	LGALS9B	Q3B8N2	356 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	LGALS9C	Q6DKI2	356 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	C5orf56	Q8N8D9	126 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640		A8MWV9	139 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	PAX2	Q02962	417 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	CHD8	Q9HCK8	2581 aa		13.7	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBMY1B	A6NDE4	496 aa	Known RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBMY1E	A6NEQ0	496 aa	Known RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBMY1D	P0C7P1	496 aa	Known RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBMY1A1	P0DJD3	496 aa	Known RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	RBMY1C	P0DJD4	496 aa		13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	HOXD3	P31249	432 aa	Predicted RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	USP9Y	O00507	2555 aa	Predicted RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	C1orf229	Q6ZS94	237 aa	Predicted RBP	13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	CFHR4	Q92496	578 aa		13.69	□□□□□ -0.22
SCARB2-223	ENST00000640640	IGHV3-16	A0A0C4DH30	117 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	AJUBA	Q96IF1	538 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	TIMM21	Q9BVV7	248 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	LINC00158	P58513	81 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	NEGR1	Q7Z3B1	354 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	SIRPD	Q9H106	197 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	ZNF124	Q15973	351 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	GAGE13	Q4V321	117 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	NPC2	P61916	151 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	TTC32	Q5I0X7	151 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	CDPF1	Q6NVV7	123 aa		13.68	□□□□□ -0.22
SCARB2-223	ENST00000640640	PLA2G5	P39877	138 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	RASL10A	Q92737	203 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	KLF12	Q9Y4X4	402 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	SCGB1A1	P11684	91 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	KLF5	Q13887	457 aa	Predicted RBP	13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	MRPL35	Q9NZE8	188 aa	Known RBP	13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640		M0R2P5	195 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	UBE2V1	Q13404	147 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	DEFB113	Q30KQ7	82 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	FANCD2OS	Q96PS1	177 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640		I3L3M4	83 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	GNRH2	O43555	120 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	NUPR1	O60356	82 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	LGALS1	P09382	135 aa	Known RBP	13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	EIF4EBP1	Q13541	118 aa	Predicted RBP	13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	PMVK	Q15126	192 aa		13.67	□□□□□ -0.22
SCARB2-223	ENST00000640640	CRP	P02741	224 aa		13.66	□□□□□ -0.22
SCARB2-223	ENST00000640640	TMEM86B	Q8N661	226 aa		13.66	□□□□□ -0.22
SCARB2-223	ENST00000640640	HCFC1	P51610	2035 aa		13.66	□□□□□ -0.22
SCARB2-223	ENST00000640640	IGKV1D-37	A0A075B6S9	117 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	DEFB136	Q30KP8	78 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	ZNF747	Q9BV97	191 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	TRAV8-2	A0A0B4J237	113 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	DPH3	Q96FX2	82 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	TMEM141	Q96I45	108 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	C20orf78	Q9BR46	151 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	COX11	Q9Y6N1	276 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	KIAA1549	Q9HCM3	1950 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	ZNF503	Q96F45	646 aa		13.65	□□□□□ -0.22
SCARB2-223	ENST00000640640	GAGE12J	A6NER3	117 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640		F8VRH5	84 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	COX8A	P10176	69 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	GAGE1	Q13065	139 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	GAGE4	Q13068	117 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	GAGE5	Q13069	117 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	SPRY2	O43597	315 aa		13.64	□□□□□ -0.23
SCARB2-223	ENST00000640640	AZU1	P20160	251 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	FOXI2	Q6ZQN5	318 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	PRIMA1	Q86XR5	153 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	MSRB1	Q9NZV6	116 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	CKS1B	P61024	79 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	C16orf54	Q6UWD8	224 aa		13.63	□□□□□ -0.23
SCARB2-223	ENST00000640640	GTSF1	Q8WW33	167 aa		13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms