RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DIAPH2-AS1Q14236 149 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 ZNF846Q147U1 533 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 ASB16-AS1Q495Z4 193 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 CCSMST1Q4G0I0 132 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 MEIG1Q5JSS6 88 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 CLLU1Q5K131 121 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 PATE2Q6UY27 113 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 Q6ZTI0 123 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 RPS19BP1Q86WX3 136 aaKnown RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 OR5AS1Q8N127 324 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 C4orf3Q8WVX3 66 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 PP6455Q8WZ26 134 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 CLEC2BQ92478 149 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 SMIM7Q9BQ49 75 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 Q9BRP9 147 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 CST11Q9H112 138 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 NAA60Q9H7X0 242 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 NIT2Q9NQR4 276 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 METTL1Q9UBP6 276 aaKnown RBP1.09□□□□□ -2.23
CD44-239ENST00000639002 MPC1Q9Y5U8 109 aa1.09□□□□□ -2.23
CD44-239ENST00000639002 CUL7Q14999 1698 aa1.09□□□□□ -2.24
CD44-239ENST00000639002 PLXNA3P51805 1871 aa1.09□□□□□ -2.24
CD44-239ENST00000639002 CENPFP49454 3210 aa1.09□□□□□ -2.24
CD44-239ENST00000639002 KTN1Q86UP2 1357 aaKnown RBP1.08□□□□□ -2.24
CD44-239ENST00000639002 SYNJ1O43426 1573 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 KIF13AQ9H1H9 1805 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 VPS8Q8N3P4 1428 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ASPMQ8IZT6 3477 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 COL1A1P02452 1464 aaPredicted RBP1.08□□□□□ -2.24
CD44-239ENST00000639002 BCL9LQ86UU0 1499 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 IGKV1D-42A0A075B6H8 117 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 TMSB15BA0A087X1C1 80 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 TRAV1-1A0A0B4J248 108 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 IGHV1-24A0A0C4DH33 117 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 FAM236AA0A1B0GUQ0 79 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 FAM236BA0A1B0GV22 79 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 IFITM5A6NNB3 132 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ODF3BA8MYP8 253 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ERC2-IT1O76042 136 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 CLPSP04118 112 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 CTSDP07339 412 aaPredicted RBP1.08□□□□□ -2.24
CD44-239ENST00000639002 BTG2P78543 158 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ELOBQ15370 118 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 SS18Q15532 418 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 SVBPQ8N300 66 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ACBD7Q8N6N7 88 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 PLPP5Q8NEB5 264 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 SFT2D1Q8WV19 159 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 C14orf144Q96I85 54 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 Q96M85 177 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 SCN3BQ9NY72 215 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 ATG2AQ2TAZ0 1938 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 CFAP54Q96N23 3096 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 SONP18583 2426 aaKnown RBP1.08□□□□□ -2.24
CD44-239ENST00000639002 AKAP12Q02952 1782 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 TRPM6Q9BX84 2022 aa1.08□□□□□ -2.24
CD44-239ENST00000639002 WDR97A6NE52 1622 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 SSPOA2VEC9 5147 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CNTLNQ9NXG0 1405 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 USP54Q70EL1 1684 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 MYOM2P54296 1465 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 CCDC88CQ9P219 2028 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 MAPKBP1O60336 1514 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 IGLV3-9A0A075B6K5 115 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TRAV12-2A0A075B6T6 113 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TRAV14DV4A0A0A6YYC5 116 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 MUC21A0A0G2JKD1 596 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 LOC107984156A0A0G2JMH3 177 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 MUC21A0A140T8X8 626 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 C3orf85A0A1B0GTC6 90 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TCRBV4S1A1TA0A5B7 111 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TMEM218A2RU14 115 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 E7EUB6 86 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 J3QLW9 94 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 EDF1O60869 148 aaKnown RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 IFNA17P01571 189 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CD3DP04234 171 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 SHBGP04278 402 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CD2P06729 351 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CCL4P13236 92 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 MIFP14174 115 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 BRS3P32247 399 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 SSR2P43308 183 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 DSCR4P56555 118 aaPredicted RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 ZNF791Q3KP31 576 aaPredicted RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 Q56UQ5 140 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TEX261Q6UWH6 196 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CASC2Q6XLA1 102 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 Q6ZUT4 128 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 ARPINQ7Z6K5 226 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 GKN2Q86XP6 184 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 ARL17AQ8IVW1 177 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 Q8IYB0 196 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 LINC00311Q8N616 119 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 ATP6V0E2Q8NHE4 81 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 CCL4L1Q8NHW4 92 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 OTOSQ8NHW6 89 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms