RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LY96Q9Y6Y9 160 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 ABCA2Q9BZC7 2435 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 COL5A1P20908 1838 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-217ENST00000637988 IGKV1-9A0A0C4DH69 117 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 FSHBP01225 129 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 CRYGCP07315 174 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 KAAG1Q9UBP8 84 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 DMRT1Q9Y5R6 373 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 CCDC168Q8NDH2 2452 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PRSS46E5RG02 174 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 OCIAD2Q56VL3 154 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PRORYQ9H606 182 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 TBX6O95947 436 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PRB4P10163 310 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-217ENST00000637988 ZNF124Q15973 351 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 C8orf31Q8N9H6 132 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 AGMATQ9BSE5 352 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 SHISA9B4DS77 424 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 TRACP01848 142 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 Q86TA4 180 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 C10orf105Q8TEF2 133 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 A0A0A6YYD4 124 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 AMTNQ6UX39 209 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 CASC2Q6XLA1 102 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 APRG1Q8IVJ8 170 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 NDUFA4L2Q9NRX3 87 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PTPRSQ13332 1948 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 LYL1P12980 280 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 MP68P56378 58 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PRR31Q5SQ13 230 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 PRSS57Q6UWY2 283 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 LINC00479Q96M42 142 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 MPZP25189 248 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 DSCAML1Q8TD84 2053 aa4.86□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV4-61A0A0C4DH41 118 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 GFI1Q99684 422 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 LINC01548A6NM66 108 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 LINC00473A8K010 186 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 LY6G6CO95867 125 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 UTF1Q5T230 341 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 BOD1L2Q8IYS8 172 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 A0A087WV48 116 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 DNAJC9-AS1A6NH13 148 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 MESP1Q9BRJ9 268 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 NMBP08949 121 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 CXCL5P42830 114 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 BCL6BQ8N143 479 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-217ENST00000637988 BAALCQ8WXS3 180 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 CSPG4Q6UVK1 2322 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 IGLV3-9A0A075B6K5 115 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV4-38-2P0DP08 117 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 LOXP28300 417 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-217ENST00000637988 AMN1Q8IY45 258 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 ORMDL1Q9P0S3 153 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV2-70P01814 119 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 COL4A4P53420 1690 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-217ENST00000637988 KIR2DL5BA0A0G2JN68 375 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 KIR2DL5BA0A0G2JPC4 375 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 K7ERS5 55 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 SPINK8P0C7L1 97 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 WT1P19544 449 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-217ENST00000637988 KIR2DL5AQ8N109 375 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 SPANXA1Q9NS26 97 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 ZNF492Q9P255 531 aa4.85□□□□□ -1.63
SCN1A-217ENST00000637988 IGLV10-54A0A075B6I4 117 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 TMEM89A2RUT3 159 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 INAFM1C9JVW0 142 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 RBM3P98179 157 aaKnown RBP4.84□□□□□ -1.63
SCN1A-217ENST00000637988 SIGMAR1Q99720 223 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 TMEM14CQ9P0S9 112 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV4-4A0A075B6R2 117 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 IGKV1-27A0A075B6S5 117 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 TRBV20-1A0A075B6N2 111 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 RBAKDNA6NC62 111 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 SMKR1H3BMG3 65 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 K7EMI3 77 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 UBE2D3P61077 147 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 Q8N8P6 123 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 TECTAO75443 2155 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 IGLV1-44P01699 117 aa4.84□□□□□ -1.63
SCN1A-217ENST00000637988 H0Y9J4 135 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 H3BRN7 92 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 CRYGDP07320 174 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 GUSBP1Q15486 140 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 C2orf66Q6UXQ4 117 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 LOXL1Q08397 574 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-217ENST00000637988 Q6ZS49 121 aa4.84□□□□□ -1.64
SCN1A-217ENST00000637988 TRBV19A0A075B6N1 114 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 CENPVL3A0A0U1RRI6 287 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 NTF4P34130 210 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 MEGF9Q9H1U4 602 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 PNRC2Q9NPJ4 139 aaKnown RBP4.83□□□□□ -1.64
SCN1A-217ENST00000637988 LENEPQ9Y5L5 61 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 TRAV12-1A0A0B4J245 112 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV1-12A0A0C4DH73 117 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 FHL1Q13642 323 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 CITED1Q99966 193 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 TRBV7-3A0A075B6L6 115 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 C9JAW5 83 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 NAV3Q8IVL0 2385 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms