RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 IGHV4-4A0A075B6R2 117 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 C20orf202A1L168 122 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 FA2HQ7L5A8 372 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 APRG1Q8IVJ8 170 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 OR8A1Q8NGG7 326 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 C20orf173Q96LM9 149 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 AP5S1Q9NUS5 200 aa13.88□□□□□ -0.19
CLN3-263ENST00000637871 TMEM213A2RRL7 107 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 MED14OSP0DP75 135 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 MRPL52Q86TS9 123 aaKnown RBP13.87□□□□□ -0.19
CLN3-263ENST00000637871 ZNF575Q86XF7 245 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 Q8N976 141 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 PRSS3P2Q8NHM4 247 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 PRELID3AQ96N28 172 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 TMEM70Q9BUB7 260 aa13.87□□□□□ -0.19
CLN3-263ENST00000637871 IGKV3D-20A0A0C4DH25 116 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 CRXO43186 299 aaPredicted RBP13.86□□□□□ -0.19
CLN3-263ENST00000637871 SNAI2O43623 268 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 LEPROTL1O95214 131 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 RIPPLY3P57055 190 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 LCNL1Q6ZST4 164 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 FAM19A4Q96LR4 140 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 TENM1Q9UKZ4 2725 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 PRB4P10163 310 aaPredicted RBP13.86□□□□□ -0.19
CLN3-263ENST00000637871 MRPL51Q4U2R6 128 aaKnown RBP13.86□□□□□ -0.19
CLN3-263ENST00000637871 KLHDC1Q8N7A1 406 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 WFDC12Q8WWY7 111 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 ODF3Q96PU9 254 aa13.86□□□□□ -0.19
CLN3-263ENST00000637871 IGHV1-24A0A0C4DH33 117 aa13.85□□□□□ -0.19
CLN3-263ENST00000637871 C2orf70A6NJV1 201 aa13.85□□□□□ -0.19
CLN3-263ENST00000637871 RPLP1P05386 114 aaKnown RBP13.85□□□□□ -0.19
CLN3-263ENST00000637871 CD33P20138 364 aa13.85□□□□□ -0.19
CLN3-263ENST00000637871 CKS2P33552 79 aa13.85□□□□□ -0.19
CLN3-263ENST00000637871 C14orf144Q96I85 54 aa13.85□□□□□ -0.19
CLN3-263ENST00000637871 D6R8Y8 96 aa13.84□□□□□ -0.19
CLN3-263ENST00000637871 M0QZ24 198 aa13.84□□□□□ -0.19
CLN3-263ENST00000637871 AMN1Q8IY45 258 aa13.84□□□□□ -0.19
CLN3-263ENST00000637871 ZFAND2AQ8N6M9 145 aa13.84□□□□□ -0.19
CLN3-263ENST00000637871 OR10AG1Q8NH19 301 aa13.84□□□□□ -0.19
CLN3-263ENST00000637871 COL6A5A8TX70 2615 aa13.83□□□□□ -0.19
CLN3-263ENST00000637871 PET117Q6UWS5 81 aa13.83□□□□□ -0.2
CLN3-263ENST00000637871 LINC01006Q8NI28 216 aa13.83□□□□□ -0.2
CLN3-263ENST00000637871 DCANP1Q8TF63 244 aa13.83□□□□□ -0.2
CLN3-263ENST00000637871 MIEN1Q9BRT3 115 aa13.83□□□□□ -0.2
CLN3-263ENST00000637871 MAP1LC3CQ9BXW4 147 aa13.83□□□□□ -0.2
CLN3-263ENST00000637871 NDUFA7O95182 113 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 SNRPD3P62318 126 aaKnown RBP13.82□□□□□ -0.2
CLN3-263ENST00000637871 HIST2H2BDQ6DRA6 164 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 EBLN2Q6P2I7 272 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 RNF114Q9Y508 228 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 MDFIQ99750 246 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 C11orf21Q9P2W6 132 aa13.82□□□□□ -0.2
CLN3-263ENST00000637871 C10orf99Q6UWK7 81 aa13.81□□□□□ -0.2
CLN3-263ENST00000637871 SYS1-DBNDD2H3BUS1 97 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 SPATA12Q7Z6I5 190 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 DEFB125Q8N687 156 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 TMEM158Q8WZ71 300 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 MAP1LC3AQ9H492 121 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 C16orf95Q9H693 158 aa13.8□□□□□ -0.2
CLN3-263ENST00000637871 NXT2Q9NPJ8 142 aaKnown RBP13.8□□□□□ -0.2
CLN3-263ENST00000637871 CSN3P07498 182 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 LEPP41159 167 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 ASIPP42127 132 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 SPANXN1Q5VSR9 72 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 RNF185Q96GF1 192 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 SIGLEC8Q9NYZ4 499 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 PAM16Q9Y3D7 125 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 TRAV9-2A0A087WT02 112 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 TRAV2A0A0B4J234 112 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 LINC01546A6NGU7 62 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 PRSS47A8MTI9 375 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 DUSP14O95147 198 aaKnown RBP13.79□□□□□ -0.2
CLN3-263ENST00000637871 MS4A6AQ9H2W1 248 aa13.79□□□□□ -0.2
CLN3-263ENST00000637871 IGHV4OR15-8A0A075B7B6 117 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 A0A087WW49 117 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 KLLNB2CW77 178 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 K7EQG2 157 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 HOXD3P31249 432 aaPredicted RBP13.78□□□□□ -0.2
CLN3-263ENST00000637871 SPATA45Q537H7 98 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 PEMTQ9UBM1 199 aa13.78□□□□□ -0.2
CLN3-263ENST00000637871 STAB1Q9NY15 2570 aa13.77□□□□□ -0.2
CLN3-263ENST00000637871 IFI27P40305 119 aaPredicted RBP13.77□□□□□ -0.21
CLN3-263ENST00000637871 SYNJ2BPP57105 145 aa13.77□□□□□ -0.21
CLN3-263ENST00000637871 KRTAP10-3P60369 221 aa13.77□□□□□ -0.21
CLN3-263ENST00000637871 C4orf3Q8WVX3 66 aa13.77□□□□□ -0.21
CLN3-263ENST00000637871 MRAP2Q96G30 205 aa13.77□□□□□ -0.21
CLN3-263ENST00000637871 S100A4P26447 101 aaKnown RBP13.76□□□□□ -0.21
CLN3-263ENST00000637871 TSPOP30536 169 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 PROK1P58294 105 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 PRR9Q5T870 116 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 C11orf44Q8N8P7 122 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 MSRB1Q9NZV6 116 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 UQCR10Q9UDW1 63 aa13.76□□□□□ -0.21
CLN3-263ENST00000637871 MUC21A0A0G2JKD1 596 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 MUC21A0A140T8X8 626 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 LINC01619G3V211 115 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 TDRG1Q3Y452 100 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 MUC21Q5SSG8 566 aa13.75□□□□□ -0.21
CLN3-263ENST00000637871 ZNF705AQ6ZN79 300 aaPredicted RBP13.75□□□□□ -0.21
CLN3-263ENST00000637871 ZNF747Q9BV97 191 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms