RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZNF705BP0CI00 300 aaPredicted RBP7.85□□□□□ -1.15
CLN3-248ENST00000636355 BEAN1Q3B7T3 259 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 PRR9Q5T870 116 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 C9orf66Q5T8R8 295 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 GDF5OSQ5U4N7 250 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 DMRTA1Q5VZB9 504 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 ZNF493Q6ZR52 646 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 FRZBQ92765 325 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 PGLYRP4Q96LB8 373 aa7.85□□□□□ -1.15
CLN3-248ENST00000636355 MRPL18Q9H0U6 180 aaKnown RBP7.85□□□□□ -1.15
CLN3-248ENST00000636355 IGHV4-4A0A075B6R2 117 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 TRGC1P0CF51 173 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 ASIPP42127 132 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 CACNG7P62955 275 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 FABP9Q0Z7S8 132 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 ZNF747Q9BV97 191 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 SSBP4Q9BWG4 385 aaPredicted RBP7.84□□□□□ -1.15
CLN3-248ENST00000636355 SORL1Q92673 2214 aa7.84□□□□□ -1.15
CLN3-248ENST00000636355 C5orf52A6NGY3 159 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 UBE2CO00762 179 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 APCSP02743 223 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 ARMS2P0C7Q2 107 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 GZMBP10144 247 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 DEFB1P60022 68 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 NUTF2P61970 127 aaKnown RBP7.83□□□□□ -1.16
CLN3-248ENST00000636355 KRTAP24-1Q3LI83 254 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 OR10J3Q5JRS4 329 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 GFI1BQ5VTD9 330 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 LYZL1Q6UWQ5 148 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 ZFP82Q8N141 532 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 TMEM158Q8WZ71 300 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 LINC00467Q9BRT7 94 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 C11orf21Q9P2W6 132 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 AGRNO00468 2067 aa7.83□□□□□ -1.16
CLN3-248ENST00000636355 ZNF324O75467 553 aaPredicted RBP7.82□□□□□ -1.16
CLN3-248ENST00000636355 NXPH4O95158 308 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 PRB4P10163 310 aaPredicted RBP7.82□□□□□ -1.16
CLN3-248ENST00000636355 RNASE4P34096 147 aaKnown RBP7.82□□□□□ -1.16
CLN3-248ENST00000636355 RAB4BP61018 213 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 HIST2H2BDQ6DRA6 164 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 SHISA2Q6UWI4 295 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 FAM159AQ6UWV7 190 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 TRPT1Q86TN4 253 aaKnown RBP7.82□□□□□ -1.16
CLN3-248ENST00000636355 TMEM256Q8N2U0 113 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 SCRT2Q9NQ03 307 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 SELENOKQ9Y6D0 94 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 TENM1Q9UKZ4 2725 aa7.82□□□□□ -1.16
CLN3-248ENST00000636355 TRGV11A0A075B6L2 103 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 TMSB15BA0A087X1C1 80 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 SPINK4O60575 86 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 INSP01308 110 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 CD33P20138 364 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 CAMPP49913 170 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 Q0VG73 95 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 SLAQ13239 276 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 SPINK13Q1W4C9 94 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 ZNF575Q86XF7 245 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 STHQ8IWL8 128 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 WFDC9Q8NEX5 89 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 TPPP3Q9BW30 176 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 TMEM191AQ9H0A3 160 aa7.81□□□□□ -1.16
CLN3-248ENST00000636355 LOC102724200A0A096LPH7 203 aaPredicted RBP7.8□□□□□ -1.16
CLN3-248ENST00000636355 LOC105371267A0A1B0GV96 52 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 KNCNA6PVL3 124 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 M0R2Z0 102 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 S100A4P26447 101 aaKnown RBP7.8□□□□□ -1.16
CLN3-248ENST00000636355 ANXA2RQ3ZCQ2 193 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 SMIM15Q7Z3B0 74 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 GTSCR1Q86UQ5 136 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 C1QTNF4Q9BXJ3 329 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 NAGKQ9UJ70 344 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 TP53TG3Q9ULZ0 132 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 LAMTOR2Q9Y2Q5 125 aa7.8□□□□□ -1.16
CLN3-248ENST00000636355 IGHV1OR15-1A0A075B7D0 117 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 H3BVH4 76 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 PPBPP02775 128 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 HOXA5P20719 270 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 PIK3CD-AS1Q5SR53 167 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 MORN3Q6PF18 240 aaPredicted RBP7.79□□□□□ -1.16
CLN3-248ENST00000636355 AP1S3Q96PC3 154 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 NDUFAF3Q9BU61 184 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 C19orf73Q9NVV2 129 aa7.79□□□□□ -1.16
CLN3-248ENST00000636355 TRAV12-3A0A0B4J271 114 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 GRIFINA4D1Z8 144 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 RBMY1BA6NDE4 496 aaKnown RBP7.78□□□□□ -1.16
CLN3-248ENST00000636355 RBMY1EA6NEQ0 496 aaKnown RBP7.78□□□□□ -1.16
CLN3-248ENST00000636355 J3KRW8 73 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 CRXO43186 299 aaPredicted RBP7.78□□□□□ -1.16
CLN3-248ENST00000636355 RBMY1DP0C7P1 496 aaKnown RBP7.78□□□□□ -1.16
CLN3-248ENST00000636355 FRMD6-AS1P0C7T7 363 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 ESDP10768 282 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 NTF3P20783 257 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 SRIP30626 198 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 TWIST1Q15672 202 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 FAM104BQ5XKR9 115 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 OR10AG1Q8NH19 301 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 PACRGQ96M98 296 aaPredicted RBP7.78□□□□□ -1.16
CLN3-248ENST00000636355 C9orf85Q96MD7 179 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 PHLDA3Q9Y5J5 127 aa7.78□□□□□ -1.16
CLN3-248ENST00000636355 IGHV3-16A0A0C4DH30 117 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms