RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MTORP42345 2549 aa-0.6□□□□□ -2.5
SCN1A-208ENST00000625916 TLN2Q9Y4G6 2542 aa-0.6□□□□□ -2.5
SCN1A-208ENST00000625916 CADP27708 2225 aa-0.6□□□□□ -2.5
SCN1A-208ENST00000625916 WDFY4Q6ZS81 3184 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 CAPZBP47756 277 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 NDUFA6P56556 154 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 RBM3P98179 157 aaKnown RBP-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 AKIRIN2Q53H80 203 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 TMEM229BQ8NBD8 167 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 ISOC1Q96CN7 298 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 SPRR2FQ96RM1 72 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 PHB2Q99623 299 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 PBDC1Q9BVG4 233 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 ARMC1Q9NVT9 282 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 A0A0C4DFX4 3053 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 CSMD2Q7Z408 3487 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 DNAH7Q8WXX0 4024 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 UTP20O75691 2785 aaKnown RBP-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 APC2O95996 2303 aa-0.6□□□□□ -2.51
SCN1A-208ENST00000625916 PLECQ15149 4684 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 PCF11O94913 1555 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 DNAH1Q9P2D7 4330 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 AFDNP55196 1824 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 SOGA1O94964 1423 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 PTPRQQ9UMZ3 2332 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 PRKDCP78527 4128 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 TMEM30CPA0ZSE6 113 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 F2Z2F3 143 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 TPST1O60507 370 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 CFDP00746 253 aaPredicted RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 PPP1R2P41236 205 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 DNAJB13P59910 316 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 RTL8BQ17RB0 113 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 AKR1C8PQ5T2L2 129 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 CCL4L1Q8NHW4 92 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 CLEC2BQ92478 149 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 RTL8AQ9BWD3 113 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 LYRM2Q9NU23 88 aaPredicted RBP-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 COMMD3Q9UBI1 195 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 PIEZO2Q9H5I5 2752 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 MED13LQ71F56 2210 aa-0.61□□□□□ -2.51
SCN1A-208ENST00000625916 LAMC3Q9Y6N6 1575 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 FGD6Q6ZV73 1430 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 KPNA4O00629 521 aaPredicted RBP-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 LYPD5Q6UWN5 251 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 OR8J3Q8NGG0 315 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 NAT14Q8WUY8 206 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 DMAC1Q96GE9 116 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 KIAA1549LQ6ZVL6 1849 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 DOPEY2Q9Y3R5 2298 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 CDK12Q9NYV4 1490 aaPredicted RBP-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 C2CD3Q4AC94 2353 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 DCHS1Q96JQ0 3298 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 SACSQ9NZJ4 4579 aa-0.62□□□□□ -2.51
SCN1A-208ENST00000625916 BLMP54132 1417 aaPredicted RBP-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 UNC80Q8N2C7 3258 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 DYNC1H1Q14204 4646 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 CSMD3Q7Z407 3707 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 H3BQV1 296 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 ATG12O94817 140 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 IGKCP01834 107 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 BCL2P10415 239 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 ERVS71-1P61550 626 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 IQCJQ1A5X6 159 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 CCSMST1Q4G0I0 132 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 LELP1Q5T871 98 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 DIRC1Q969H9 104 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 SH3BGRL3Q9H299 93 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 C19orf12Q9NSK7 152 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 GVINP1Q7Z2Y8 2422 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 SRCAPQ6ZRS2 3230 aa-0.63□□□□□ -2.51
SCN1A-208ENST00000625916 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 EYSQ5T1H1 3165 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 TRIOO75962 3097 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 ANK1P16157 1881 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 A0A0G2JMM0 328 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 C9JAW5 83 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 IL7P13232 177 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 TPT1P13693 172 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 GLRXP35754 106 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 NUP35Q8NFH5 326 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 OR5H6Q8NGV6 325 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 BPESC1Q9GZL8 116 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 ATG5Q9H1Y0 275 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 TAF9BQ9HBM6 251 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 MPC1Q9Y5U8 109 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 SPAG17Q6Q759 2223 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 MGAQ8IWI9 3026 aa-0.64□□□□□ -2.51
SCN1A-208ENST00000625916 DCHS2Q6V1P9 2916 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 ZFHX3Q15911 3703 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 AKAP6Q13023 2319 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 LRBAP50851 2863 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 F5P12259 2224 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 TMEM189A5PLL7 270 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 EDF1O60869 148 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 NMBP08949 121 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 SAA1P0DJI8 122 aaPredicted RBP-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 FABP2P12104 132 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 MAXP61244 160 aa-0.65□□□□□ -2.51
SCN1A-208ENST00000625916 KRTAP6-2Q3LI66 62 aa-0.65□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms